Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3618 154 2e-31 seq1079 129 9e-24 seq5020 120 5e-21 seq2484 114 2e-19 seq970 93.3 7e-13 >seq3618 Length=19201 Score = 154 bits (170), Expect = 2e-31 Identities = 335/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || ||||| || |||| ||| ||||| |||||||| ||||||||||| ||||| Sbjct 2120 TGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAG 2179 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||| || | ||| | ||| | || || | ||| | | ||| Sbjct 2180 GTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGCCA 2239 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || ||| |||||||| | ||||| | || ||||| || |||||||| || Sbjct 2240 ATGCCACCAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCA 2299 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| | |||||||| | |||||||| ||||| || | | | || || Sbjct 2300 ATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTTGAGGGGTACCA 2359 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 ||||||||||||||||| | || ||| | ||| |||||| | |||||| Sbjct 2360 GCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTC 2419 Query 2073841 GCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACG 2073900 | | |||||| | | | || ||| |||| || ||||| |||||| Sbjct 2420 TCAATAACGCGCTCAA-----TATT----GTC-----ACCC-CAGATGCCGACAGCGACG 2464 Query 2073901 CGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGAC 2073960 ||||| ||||||| ||| || ||||| || | | || | |||| |||||| || Sbjct 2465 CGCATAATCATGTGCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGAT 2524 Query 2073961 CGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGCG 2074020 || ||||||| | ||||||||| |||| | || || |||| ||| ||| Sbjct 2525 CGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCACGGTCGTACACGATCGCG 2584 Query 2074021 GCGTCGAGGGCCTCCTTGTG 2074040 | ||| || |||||||||| Sbjct 2585 GAGTCCAGCTCCTCCTTGTG 2604 >seq1079 Length=61444 Score = 129 bits (142), Expect = 9e-24 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 2035652 CAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTAT 2035711 ||||||||| ||||||||||||||||||||| | || |||||||||||||||||| | || Sbjct 52706 CAACTACCTGGACATCAAGCCCCTCCTCGATGTTGGCTGCAAGACCGTGGCCAACATGAT 52765 Query 2035712 CAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||||| ||||||||||| || || ||||| || ||||||| Sbjct 52766 TAAGGGCAAATCGCCCGAGGAGATTCGAAAGACTTTCAACATCA 52809 >seq5020 Length=23815 Score = 120 bits (132), Expect = 5e-21 Identities = 179/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| |||||| ||||| |||||||| | | Sbjct 18976 TGACACCAGCCTTCTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTAGTCTTGCCACCCA 18917 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | ||| ||||||| | ||| ||||||| || Sbjct 18916 GGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTGGAGTTGTACACCTTCTCGTTGCCAA 18857 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||| Sbjct 18856 GAGCGACG--AGGAGGCGGTCAGCGACGAACTCAATGTACTGCTGCATGAGGGTGGCGTT 18799 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| ||| || ||| || | || ||| ||||| || ||| | ||||| Sbjct 18798 CATGCCGAGGAGGGCACAGGGAAGAGCGTCAGTGAGGAACTCCTTTTCGTAAACCACGGC 18739 Query 794129 CTCGATGATGAT 794140 ||| |||| || Sbjct 18738 CTCAGTGATAAT 18727 >seq2484 Length=14179 Score = 114 bits (126), Expect = 2e-19 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 ||| || |||||||| ||||| | ||||||||||||| |||||| || | || || | Sbjct 10525 CCTCCCCCCCGGCCGACACAAACTCGTCATCCTCGATGAAGCCGACAGCATGACCTCTGG 10584 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 || ||||| || |||||| |||||||||| ||| ||||||| || || || || | Sbjct 10585 TGCGCAGCAAGCTCTCCGACGAACCATGGAAATATACTCCAACACAACACGTTTCGCTTT 10644 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 |||||||| ||| | | |||| || | || ||| || |||||||| | || Sbjct 10645 TGCCTGCAATCAGTCCAACAAGATCATAGAGCCACTGCAGTCACGCTGCGCCATTCTCCG 10704 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 | ||| ||||| || ||||| ||| | ||| || | | |||| ||||| || || Sbjct 10705 TTATGCCAAACTCACTGATGCCCAAGTCGTCAAGCGCCTTCTCCAGATCATCGAGGCTGA 10764 Query 2019434 AAAGGT 2019439 ||||| Sbjct 10765 GAAGGT 10770 >seq970 Length=77373 Score = 93.3 bits (102), Expect = 7e-13 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| || || |||||| |||| || || ||| | | Sbjct 72279 GTACTTGGTAACGGCCTTGGTACCCTCAGAAACAGCGTGCTTGGCAAGCTCACCGGGAAG 72338 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||||| || | ||||||||| || || | | ||||||| |||||| || | Sbjct 72339 AATCAGGCGGACAGAGGTCTGGATTTCCCGAGAGGAGATCGTGGACTTCTTGTT-GTAGG 72397 Query 1485591 CGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 || || || |||||| ||| | | ||| |||| ||||| Sbjct 72398 CGGCAAGCTTAGAGGCCTCAGTGGCAACGCGCTCGAAGATGTC 72440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915623470570784