Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_024365.1 Length=51090 Score E Sequences producing significant alignments: (Bits) Value seq5299 215 2e-51 seq4017 167 8e-37 >seq5299 Length=367 Score = 215 bits (238), Expect = 2e-51 Identities = 181/222 (82%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 39848 GACGTCTGGGGATGGATTCAAAGCGAGATCCTTGCCGATACCGGCAGCATCCACAACGAA 39907 || ||||||| ||| | | | ||||||||| ||||| ||||| ||||||||||||||| Sbjct 142 GAAGTCTGGGAGTGGCTCCTAGCCGAGATCCTCGCCGAAACCGGTAGCATCCACAACGAA 201 Query 39908 GACCATGCCCATTTGATCGATGCTGACATCTGCATCATGTGGGCCTCATCTGCCTTCACG 39967 || ||||||||| |||||||||| |||| | | |||||||| || | ||||||||| Sbjct 202 GAGCATGCCCATCTGATCGATGCGAACATTCGTGTGATGTGGGCGTCTGCCGCCTTCACG 261 Query 39968 AAGCAAGGTCGCACAGTGCTGGGCCAAGCCGAACAGGTTGCGTTCCGTGCCGGTGGTTGG 40027 ||| | ||| | || ||| ||||||| ||||| ||| | || ||||| || || |||||| Sbjct 262 AAGAAGGGTAGGACGGTGGTGGGCCAGGCCGAGCAGCTAGCATTCCGAGCTGGCGGTTGG 321 Query 40028 CAGAAGGCCCGGATGGAGCAGCAGATGCGTGACTGGTTCGGC 40069 | |||||||||||||||||| ||||||||||| ||||||||| Sbjct 322 CTGAAGGCCCGGATGGAGCAACAGATGCGTGATTGGTTCGGC 363 >seq4017 Length=362 Score = 167 bits (184), Expect = 8e-37 Identities = 160/203 (79%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 17817 ATGTCGTTCAGGCGCTCTACCCTCACGGCGGTTACCTCCAGCAGGATGCGGCTGACCCAG 17876 ||||| | || ||||| || | |||||||| | ||||||||||||||| ||| ||||| Sbjct 217 ATGTCCTGCAACCGCTCGACGCGGACGGCGGTGATCTCCAGCAGGATGCGACTGGCCCAG 158 Query 17877 CGCGGCATGTGGATGGATGGCCGAGTTTTGCCAGGCGTGATCATCGAGCATCCGGTTTGC 17936 |||| ||||||||| ||| || ||||| || || |||||||| || || ||||| ||| Sbjct 157 TGCGGTATGTGGATGCTTGGGCGTGTTTTCCCTGGTGTGATCATGGAACACCCGGTCTGC 98 Query 17937 CTTGAGGAACCA--TCTGCCGGGTACTGGATTGGCTCGCCGTGGCTCAGCTCTCGCGGCG 17994 | || ||| ||||||||||||||||| ||||| || |||||||| |||||||||| Sbjct 97 C--GAACTGCCACGTCTGCCGGGTACTGGATCGGCTCCCCTTGGCTCAGGTCTCGCGGCG 40 Query 17995 CGATCGCATTAACCTGCGCGTCA 18017 ||| | | |||||| |||||| Sbjct 39 CGACTGTGTCAACCTGAGCGTCA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163355039500544