Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3618 152 7e-31 seq5020 134 2e-25 >seq3618 Length=19201 Score = 152 bits (168), Expect = 7e-31 Identities = 338/502 (67%), Gaps = 19/502 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| || ||| | || ||| ||| ||| || || |||| |||||| Sbjct 2604 CACAAGGAGGAGCTGGACTCCGCGATCGTGTACGACCGTGATTTCAACTACCAATACTTT 2545 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | |||| || || || |||||| ||| | || | | || ||||| Sbjct 2544 GGCTTCAAGACCCTGGAGCGATCATACCTGCTCAAGCTCAACGGCAAGATTGTTGAGCGT 2485 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 || ||| | ||| | ||||| ||||| | ||| | |||| | |||||| Sbjct 2484 CCACAGCACATGATTATGCGCGTCGCTGTCGGCA--TCTGGGGT----------GACAAT 2437 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA-G 259919 | |||| ||| | | |||||| | ||||||| |||| ||| ||||| ||| | Sbjct 2436 A---TTGAGCGCGTTATTGAGACCTACAACCTCATGTCG-AGCAAGTTTTTCAC-TCACG 2382 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | ||||||||||| ||||| || || || | | ||| ||||| |||||||| Sbjct 2381 CCTCACCCACGCTCTTCAATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTG 2322 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||| | || || || ||||||||||||||||||||| ||||| | | Sbjct 2321 TCGACATGAAAGATGACAGCATTGATGGCATCTATGACACGCTCAAGACTTGCGCTATGA 2262 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 ||||||| ||| || ||||| || | | ||| | || || | ||| | | Sbjct 2261 TCTCCAAAATGGCTGGTGGCATTGGCCTCAATGTTCACCGAATTCGGGCTACTGGCTCTT 2202 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || |||||||||||| ||||| ||||||||||| ||||| || || || ||| Sbjct 2201 ACATTGCCGGCACCAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACA 2142 Query 260160 ACACGGCGCGCTACGTCGACCA 260181 |||| || |||||||| ||||| Sbjct 2141 ACACTGCCCGCTACGTTGACCA 2120 >seq5020 Length=23815 Score = 134 bits (148), Expect = 2e-25 Identities = 213/300 (71%), Gaps = 13/300 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||| |||||||| |||| | Sbjct 18065 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAAATCGATC 18123 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| ||| |||||| | ||| Sbjct 18124 TCTCCAAAGATCTTCACG----ACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTC 18179 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||| || | || ||| ||||| ||| || |||||||| ||||||||||| Sbjct 18180 ATCTCTCACATCTTGGC-TTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTGGT 18238 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | || || ||| | || ||||| || | || ||||| |||||||| Sbjct 18239 TGAGCGCTTCAGCGCCGAAGTGCAAGTCCCTGAGGCTCGCTGCTTCTACGGTTTCCAGAT 18298 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || ||||| ||||| || || ||||| |||||||||||||| ||| ||||||| Sbjct 18299 TATGATGGAGAACATTCACTCCGAGACATACTCTCTCCTGATCGACACATACATCAAGGA 18358 Score = 98.7 bits (108), Expect = 1e-14 Identities = 175/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 |||||||| | ||| || ||||| ||| || | || || || ||| ||||| Sbjct 18736 GAGGCCGTGGTTTACGAAAAGGAGTTCCTCACTGACGCTCTTCCCTGTGCCCTCCTCGGC 18795 Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651 |||||||||||| |||||| |||||||||| | || ||||| |||||||| |||| | Sbjct 18796 ATGAACGCCACC-CTCATGCAGCAGTACATTG-AGTTCGTCGCTGACCGCCTCCTCGTCG 18853 Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711 | || ||| | |||||| ||| | ||||||| ||| | |||||| ||| Sbjct 18854 CTCTTGGCAAC-GAGAAGGTGTACAACTCCACCAACCCTTTCGACTTCATGGAGAACATC 18912 Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGGC 1456770 || || | |||||||| ||||| |||||| || || | ||| ||| ||||| || Sbjct 18913 TCCCTGGGTGGCAAGACTAACTTCTTCGAGAAGCGTGTCGCCGACTACCAGAAGGCTGGT 18972 Query 1456771 GTCACCGCCA 1456780 |||| |||| Sbjct 18973 GTCATGGCCA 18982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177246378036672