Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3611 122 8e-23 >seq3611 Length=65567 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||||||||||| || ||||| || ||| | Sbjct 3055 CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTC 3114 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || || || |||| ||||| || |||| ||| Sbjct 3115 AGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 3174 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | | |||||||| || || ||| Sbjct 3175 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACC 3234 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | || || ||||| |||||||| Sbjct 3235 TCCAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 3281 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||||||||||| || |||||||| ||| | Sbjct 3283 CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTC 3342 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||||||||| || || |||| ||||| || |||| ||| Sbjct 3343 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGA 3402 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| ||||| ||||| |||| | | ||||| || || || Sbjct 3403 ATACCCTCCTTATCCTGAATCTTGCTCTTCA-CGTTGTCGATGGTGTCAGATGACTCAAC 3461 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || || |||| ||| || || || || ||||| Sbjct 3462 CTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || || ||||||||||| || || Sbjct 3546 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAA 3605 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||| || |||| |||| || |||||| ||| |||||| ||| | || Sbjct 3606 GATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTTGA-CGT 3664 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||| || ||||| | ||||| || || || |||||||| || | Sbjct 3665 TGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGA 3724 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 3725 CGAAGATTTGCAT 3737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450760601908480