Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3611 131 2e-25 seq629 114 1e-20 seq3571 87.8 2e-12 >seq3611 Length=65567 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| || |||||||||||| Sbjct 3511 CCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 3570 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || || || |||| ||||| ||||| || || Sbjct 3571 AGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 3630 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| ||| ||||| ||| | ||||| ||||| || || Sbjct 3631 ATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACC 3690 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || ||||| ||||| || ||||| |||||||| Sbjct 3691 TCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 125 bits (138), Expect = 7e-24 Identities = 156/213 (73%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || |||||||| || |||||||||||| | Sbjct 3739 CCGCCACGGAGGCGGAGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 3798 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || || |||| ||||| ||||| || || Sbjct 3799 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 3858 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| ||| ||||| ||| | |||||||| ||||| || Sbjct 3859 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACC 3918 Query 134667 TCGAGAGTAATGGTTTTACCGGT---TAAAGTT 134696 || ||||| ||||| || || || ||||||| Sbjct 3919 TCAAGAGTGATGGTCTTGCCAGTGACTAAAGTT 3951 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 ||||| || ||||||||||||| | ||| | || || ||||| || || || ||| Sbjct 3319 TCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAA 3378 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||| ||||| ||||| || || || || || || || ||||| || || || | Sbjct 3379 ATCAGGCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGAATCTTGCTCTTCACGTTG 3438 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 || | ||||| || || || || |||||||| || || || ||||| | ||| || ||| Sbjct 3439 TCGATGGTGTCAGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACG 3498 Query 134703 AAAATTTGCAT 134713 || |||||||| Sbjct 3499 AAGATTTGCAT 3509 >seq629 Length=20836 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||||| | |||| | || || Sbjct 19457 ACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCA 19398 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| ||||| || || || || ||||| || || || || Sbjct 19397 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 19338 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || ||||| || || || || || ||| Sbjct 19337 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 19278 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || | || || ||||| || ||||| ||| Sbjct 19277 CCCGTGAGGGTCTTCACGAAGATCTGCATCTTG 19245 >seq3571 Length=7344 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | |||| | || || ||||| ||||| || || | Sbjct 6127 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 6186 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||| || || || || ||||| || || || || || || ||||| || Sbjct 6187 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 6246 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||| || || || || ||||| || ||||| || || ||||| || ||||| | Sbjct 6247 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACAA 6306 Query 134704 A 134704 | Sbjct 6307 A 6307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505361404837120