Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3618 206 4e-48 >seq3618 Length=19201 Score = 206 bits (228), Expect = 4e-48 Identities = 794/1226 (65%), Gaps = 52/1226 (4%) Strand=Plus/Plus Query 69003 TAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACT 69062 ||| ||| ||| ||||| || || || |||| ||| ||||| || | || || || | Sbjct 1360 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 1418 Query 69063 A-TCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGA 69121 | ||||| || | | | | || || || || || | || ||||| || | ||||| Sbjct 1419 ACTCGAAAGGCAATCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCGA 1478 Query 69122 TAGGTCTATGTCTCTTATTTGAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCT 69180 | || | || | | | || | || | || || || | |||||| | || | ||| Sbjct 1479 TGGGCCGGTGACGCATGTT-GCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 1537 Query 69181 ATAATTTTATTAAGATTTCGGACTACTACTT---TAACCACGTCCTTTAGTTTGAGAAAA 69237 ||||| || || ||||| || || || |||| |||| ||| | || || || Sbjct 1538 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGC---AGCTTCTTGAAG 1594 Query 69238 TCAAATCGTCCATC----TA--TAACAAACATATTCAGTGCTACAGATGCTAGATTACAA 69291 || || | | |||| || | | ||| | ||| || | ||| || || || ||| Sbjct 1595 TCGAAGCATGCATCATCGTAGTTGATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAA 1654 Query 69292 ACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTG 69351 || || ||||| | || | | ||| | || ||||| || || || || | | Sbjct 1655 ACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGG 1714 Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 || || || || || | ||| || ||||| ||| || ||||||||||| || || || Sbjct 1715 ATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAAT 1774 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 ||| ||||||| ||| |||| | || | || || | ||||| ||| || || Sbjct 1775 GGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGATG 1834 Query 69472 ACGGTCTTGTAACGCTT---CTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCAT 69526 | |||| | ||| ||| | || || || | ||| | ||| || ||||| Sbjct 1835 GTGCGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCC--TCAAATTC-- 1887 Query 69527 CTCCCCAAA-CA-TCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 ||| ||| | || || | | ||||| || ||||| |||||||| | || |||| | | Sbjct 1888 CTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCC 1947 Query 69585 ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCT 69644 || | || || || ||||| || ||||| |||||||||||||| | || ||||| | Sbjct 1948 ATTTTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACG 2007 Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttA---AGATCGAGAAACTCCATAATATC 69701 || | | || || || || || || ||| |||||||| ||||| | | || Sbjct 2008 GGCACGAACCTCCTCTTTGCC---ATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTC 2064 Query 69702 AGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATC 69761 || ||||| ||||| || || || || | | | || || || ||||| || || || || Sbjct 2065 TGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTGCCACCTTGGTC 2124 Query 69762 TATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACC 69821 | ||| | ||||||||| || |||| | ||||| || | || ||||| || | || Sbjct 2125 AACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCC 2184 Query 69822 ATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCC 69881 || || || | ||| ||| || | || ||||| || | || || || || Sbjct 2185 GTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGCCAATGCC 2244 Query 69882 TCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCT 69941 || |||||||| ||||| | ||| ||| || | |||||||| || || || ||||| Sbjct 2245 ACCAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCT 2304 Query 69942 ATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA---TGTATAGTTCCCGC 69998 |||||| |||||| | ||||| ||| |||| | | ||| || || || || Sbjct 2305 GTCATCTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGC 2361 Query 69999 ATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTC 70058 ||| || | || || || ||||||||||| | || || | || ||||| || || Sbjct 2362 ATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTC 2421 Query 70059 AATAGCTGATTCTATAT----CCCACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 |||| | || |||| || | |||| || | ||||| ||||| | ||| | Sbjct 2422 AATAACGCGCTCAATATTGTCACCCCAGATG----CCGACAGCGACGCGCATAATCATGT 2477 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 |||| || || || || | || || | || | |||||||||| ||||| || | Sbjct 2478 GCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCT 2537 Query 70175 TAAACCCAAAATAGTTGTA--TGAAA 70198 | || ||||| || | ||| ||||| Sbjct 2538 TGAAGCCAAAGTATTGGTAGTTGAAA 2563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686858518275840