Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1088 89.7 4e-13 >seq1088 Length=17326 Score = 89.7 bits (98), Expect = 4e-13 Identities = 193/286 (67%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 19425 ACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGA 19484 ||| ||||| | | ||||||||||| | | || || ||||| ||||| || ||||| Sbjct 4963 ACCGCCCAAGGTCATCAATGGTCCTGAGGTGCTCAACAAGTATGTTGGTCAGTCTGAAGA 4904 Query 19485 AAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAA 19543 ||| | ||| ||||||| ||||| || |||| | | || | |||||| | | | Sbjct 4903 AAACATCCGAAAGCTGTTTGCGGACGCCGA-GAAGGAGTACAAGGAGAAGGGCGACGAGA 4845 Query 19544 GTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG 19603 || | ||||||| || || | ||||| |||| || | || ||||| | ||||| | Sbjct 4844 GTAGTCTGCACATCATCATCTTTGATGAGCTGGATGCTGTGTGCAAGCAGCGTGGTTCAG 4785 Query 19604 G---TGTA------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAG 19654 | || | | ||| || |||| ||||||||||||| | || || || | | Sbjct 4784 GAGCTGGAGGCGGTACTGGTGTCGGAGACAGTGTTGTCAATCAATTGCTATCCAAGCTGG 4725 Query 19655 ACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 | ||||| ||||||| || || ||| | | || || ||||| || Sbjct 4724 ATGGTGTCGACCAACTAAACAACATTCTGCTCATCGGTATGACCAA 4679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397427633565280