Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3611 131 1e-25 seq629 98.7 8e-16 >seq3611 Length=65567 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || || || || ||||||||||||| |||| | || || Sbjct 3301 ACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCA 3360 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| ||| |||| || |||||||||||||| || | |||||| ||||| Sbjct 3361 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGA 3420 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | |||| | | || | ||||| | | ||||| || ||||| || | ||| Sbjct 3421 ATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTGATCGTCTTG 3480 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||||||| || || |||||||||||| Sbjct 3481 CCGGTCAGAGTCTTGACGAAGATTTGCATA 3510 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | |||| | || || ||||| ||||| Sbjct 3541 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTACCA 3600 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || |||||||||||||| || | ||||| ||||| ||||| || Sbjct 3601 GCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTTG 3660 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | ||||| || ||||| || | ||||| |||| ||| Sbjct 3661 ACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTC 3720 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 3721 TTGACGAAGATTTGCATA 3738 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || || || || || |||||||||| |||| | || || Sbjct 3073 ACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCATCCTCC 3132 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| || |||||| | || || |||||||||||||| || | |||||| || || | Sbjct 3133 AACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGG 3192 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | |||| | || | ||||| ||| || || || || || || | ||| Sbjct 3193 ATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTG 3252 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || |||||||| ||||| Sbjct 3253 CCGGTGAGCGTCTTGACAAAGATCTGCAT 3281 >seq629 Length=20836 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||||||| | |||| | || || ||||| || || Sbjct 19445 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 19386 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || |||||||| ||||| || | ||||| || || ||||||| || Sbjct 19385 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 19326 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || |||| || ||||| || || Sbjct 19325 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 19266 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 19265 TTCACGAAGATCTGCAT 19249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424904072431872