Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3618 159 4e-34 seq5020 93.3 5e-14 >seq3618 Length=19201 Score = 159 bits (176), Expect = 4e-34 Identities = 554/850 (65%), Gaps = 31/850 (4%) Strand=Plus/Plus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||||||||| ||| || | | | ||||| | || || || || | |||||| Sbjct 1649 TTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAG 1708 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || || || || | ||||| ||||| ||||| |||||| || |||||||||||| Sbjct 1709 CTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGC 1768 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC 111429 ||| | || | || ||||| ||||||| | || || | | ||||| | | | | | Sbjct 1769 ATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCC 1828 Query 111430 TGGTACAATG--GCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAA 111486 | | ||| ||| | |||| | |||||| ||||||||| ||| | || ||||| Sbjct 1829 TTG----ATGGTGCGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAA 1884 Query 111487 CTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 |||||| ||| || ||||| || || || || | ||||| | || | ||| | Sbjct 1885 TTCCTCA-CCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACT 1943 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC--ACAGGGATGAAAAGAG 111603 ||| || ||| || ||||||||||| || || ||||||| | || || |||| || Sbjct 1944 CGCCATTTTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAA--AG 2001 Query 111604 ATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGAT 111663 ||| | ||| |||| || | || ||||| || | || |||||||| | || Sbjct 2002 ATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGAC 2061 Query 111664 ATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGC 111717 || | |||||| || ||||| || | |||| | || ||||| ||| | Sbjct 2062 GTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCACC---AGGACGCTTATTGCCACC 2118 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 ||| | || ||||| || ||| ||| || || || ||||| || | || |||| || Sbjct 2119 TTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGA 2178 Query 111778 TTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 111837 || || || || ||| ||| | | || | | || | | | || Sbjct 2179 GGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGCC 2238 Query 111838 AATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCG 111895 ||| || |||||| || ||||| | ||||| | | | | || || ||||||| || Sbjct 2239 AATGCCACCAGCCATTTTGGAGATCATAGCGCA-AGT-CTTGAGCGTGTCATAGATGCCA 2296 Query 111896 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 111955 | || ||| || || || ||| ||| |||||| || | ||| | | || ||| Sbjct 2297 TCAATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTTGAGGGGTA 2356 Query 111956 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGT 112013 |||||||||||||| || |||| |||||| ||| | | |||| ||||| || || Sbjct 2357 CCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGA--AAAACTTGCTCGACATGAGGTTGT 2414 Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 | ||||| | || ||||| | || || |||||||| ||||| ||||| | || Sbjct 2415 AGGTCTCAATAACGCGCTCAATATTGTCACCCCAGATGCCGACAGCGACGCGCATAATCA 2474 Query 112074 TGTACTGTGG 112083 ||| |||||| Sbjct 2475 TGTGCTGTGG 2484 >seq5020 Length=23815 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||| ||||||||||| || || ||||| || || ||||| ||||| Sbjct 18672 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACC 18613 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | ||| | ||| |||||| || Sbjct 18612 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAAT 18553 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 |||||| ||| || || |||| ||||| | ||||||| ||| ||| || ||| Sbjct 18552 ACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGA-TGAGTTCTTGTCAGCAA 18494 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTT 122864 ||| || | ||||| | |||||||| Sbjct 18493 TCCACTTGAGAGCCCAGTCGGCCTTCTT 18466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986028057600