Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3457 161 3e-34 seq3611 136 1e-26 seq336 116 1e-20 >seq3457 Length=36760 Score = 161 bits (178), Expect = 3e-34 Identities = 483/733 (66%), Gaps = 13/733 (2%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| | || |||||| | ||||| || || || || || | | | | | | |||| Sbjct 14448 CCGCCGTCGGTATCGATCTGGGTACCACGTACTCCTGCGTGGGTATCTTCCGCGAGGATC 14389 Query 349257 G-TGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTT 349315 | ||| || || ||||| || || || |||||| | || || || || | ||| || || Sbjct 14388 GATGT-GATATCATTGCCAACGACCAGGGTAACCGTACCACACCCTCCTTCGTCGCTTTC 14330 Query 349316 ACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAA 349375 ||||| || |||||| |||| |||||| | || || || || | || || || | Sbjct 14329 ACCGACACCGAGCGTTTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCAG 14270 Query 349376 AATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGA--CAAATCTACA 349432 || || || || ||||| ||||| || ||||| | ||||| | || || | | || Sbjct 14269 AACACTGTCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTTCAGC-GATCCAGAGGTCCA 14211 Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 | ||| | || || || || || | |||| | | ||| ||| || || | Sbjct 14210 GG--CCGATATGAAGCACTTCCCCTTCAAGATTGT-CGACAAG--GGTAGCAAGCCCGTC 14156 Query 349493 ATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAAT 349551 || ||||| || | || ||||| || || || || |||||| || ||||| || || Sbjct 14155 ATCGAGGTCGAGTTCAAGGGTGAGACCAAGACC-TTCACACCCGAGGAGATTTCCTCCAT 14097 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGC 349611 |||| | || ||| || | ||||| || || | || | || || | | || Sbjct 14096 GGTTCTCACCAAGATGCGTGAGACCGCTGAGGCTTACCTCGGCGGCACTGTCAACAACGC 14037 Query 349612 TGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 ||| | || || || ||||| || || || | |||||| || || || || || || Sbjct 14036 TGTCGTCACCGTTCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCCGG 13977 Query 349672 CAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGC 349731 ||| || || | ||||| || | || || || || |||||||| || || ||||| Sbjct 13976 TCTCATCGCTGGCCTGAATGTCCTCCGTATCATCAACGAGCCCACTGCCGCCGCCATTGC 13917 Query 349732 ATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 || || || || || | | ||| || || | || || || ||| | ||||| Sbjct 13916 CTACGGTCTCGACAAGAAGGTTGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGG 13857 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 |||||| || ||||| || || || || |||| ||||| || || || || || | || Sbjct 13856 TGGTACCTTCGATGTTTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCAC 13797 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT 349911 |||||| || || || || ||||| ||||| || || || |||||||| || || || Sbjct 13796 TGCTGGCGACACTCACCTCGGTGGTGAAGACTTCGACAACCGTCTCGTAAACCACTTCGT 13737 Query 349912 TAAAGAATTTAAG 349924 ||| || || ||| Sbjct 13736 TAATGAGTTCAAG 13724 >seq3611 Length=65567 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || || |||||||||||||| || || || || | Sbjct 3503 TTTGCATACCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 3562 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || || ||||| ||||| || || || |||| Sbjct 3563 AGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGTTGAT 3622 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || ||||||||||| || | || || || || || | ||||| | Sbjct 3623 CCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACG 3682 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| ||||| || | ||||| ||||| | || || || || || ||||| Sbjct 3683 ACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 105 bits (116), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | || |||||| ||| || || || || || || Sbjct 3279 CATGCCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTC 3338 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| ||||| || || ||||| || || || || || ||||| || Sbjct 3339 GCTCAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGG 3398 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || ||||||||||| || ||| || || || || || | ||||||| | Sbjct 3399 TGGAATACCCTCCTTATCCTGAATCTT-GCTCTTCACGTTGTCGATGGTGTCAGATGACT 3457 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || | ||||| ||||| || || || || || || ||||| Sbjct 3458 CAACCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 >seq336 Length=33492 Score = 116 bits (128), Expect = 1e-20 Identities = 112/142 (79%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||| ||| || || | ||||||||||||||||||||| || Sbjct 30464 CGCGGCACACCAAGGGTAACGTTC---TTGGACGAAACACCAGCAAAGTGGAAAGTGTTC 30408 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | |||||||||||| ||||| || |||| |||||||||||||| Sbjct 30407 AGTGTCATCTGTGTGGCGGGCTCACCAATGGACTGGGCAGCAAGGACGCCAACCATTTCG 30348 Query 377578 CCAGGATTGACAATAGC-CTCT 377598 || || ||||| | ||| |||| Sbjct 30347 CCGGGGTTGACGAAAGCTCTCT 30326 Score = 93.3 bits (102), Expect = 1e-13 Identities = 171/247 (69%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 378231 AATATAACCAGTTT-GACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCA 378289 ||| || ||||||| | || || || || || |||||||| | ||| |||||||| ||| Sbjct 29673 AATGTAGCCAGTTTCGGCT-GTCTTGACAGCGGTATCAATGAGACCTTCACGACCAGCCA 29615 Query 378290 TTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATC 378349 | || ||||| || ||||||||||| || || |||| | | || |||||| || | Sbjct 29614 TGGCGTGGAAAAAGAATTCAGTAGGCGTCAGGCCACGCAGGTAGGAGTTCTCAACGAAGC 29555 Query 378350 CTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACC 378409 | | || | || || | ||| | || || | ||||| | || || | || || | Sbjct 29554 CACGAGCTTCAGGAGAGTAATCGTCCTTGGTGAAGTGAGGAAGAGTGCGGTACTTGAAAC 29495 Query 378410 CATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAG 378466 | | ||||| || ||||| |||||| |||| |||| |||| |||| ||| |||| Sbjct 29494 CGAACGGAATGCGCTTTCCTTCAACAATCTGCTGACCGACAAGGGCAG---TCATCTGAG 29438 Query 378467 CAATATT 378473 ||||| Sbjct 29437 AGATATT 29431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515140710462368