Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3618 223 4e-53 seq3781 91.5 2e-13 >seq3618 Length=19201 Score = 223 bits (246), Expect = 4e-53 Identities = 504/750 (67%), Gaps = 12/750 (2%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||||||||| | || ||| |||||| | ||| || |||||| ||| || Sbjct 2469 ATGCGCGTCGCTGTCGGCATCTGGGGTGACAATATTGAGCGCGTTATTGAGACCTACAAC 2410 Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | ||| ||| |||| || || |||||| | || || || ||||| |||||||| Sbjct 2409 CTCATGTCGAGC---AAGTTTTTCACTCACGCCTCACCCACGCTCTTCAATGCTGGTACC 2353 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 ||| ||||| | ||| ||||| || || | ||||| |||||| || || ||| Sbjct 2352 CCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATGACAGCATTGATGGC 2293 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || ||||||||| || || |||||||| | | ||||| || || || Sbjct 2292 ATCTATGACACGCTCAAGACTTGCGCTATGATCTCCAAAATGGCTGGTGGCATTGGCCTC 2233 Query 53432 CACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | || || | || | || || | ||| | || || || |||||| | || Sbjct 2232 AA-TGTTC-ACCGAATTCGGGCTACTGGCTCTTACATTGCCGGCACCAACGGCACCTCCA 2175 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 |||| | |||||||||||||| |||||||||||||| ||||| ||||| |||| |||| Sbjct 2174 ATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCCCGCTACGTTGACCAAGGTG 2115 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||||| || | |||||||| ||||| || || |||||| | ||| | | | Sbjct 2114 GCAATAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAACCCTGGCACTCAGACGTCTTTG 2055 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || ||| ||| || || | || ||| | || |||||| || || Sbjct 2054 AGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCGTGCCCGTGATCTTTTCC 1995 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 ||||| ||||||||||| ||||||||| | || ||||| | | |||||| | Sbjct 1994 TCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAGAAAAATGGCGAGTGGACAC 1935 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 | ||||| || || |||||||| |||| | | | || ||| |||||||| ||| | | Sbjct 1934 TCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTG-CTATGGTGAGGAATTTGAGGCA 1876 Query 53789 ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 |||| || ||||| ||||| |||| | ||||||| | || | Sbjct 1875 TTGTACGAGAAGTACGAGAGGGAGGGCAAGGGCAAGCGCACCATCAAGGCTCAAAAGCTT 1816 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| | | ||||| || ||| ||||| || | || | |||| ||||||||| Sbjct 1815 TGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAATCCATTCATGCTCTACAAGGAC 1756 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | |||| |||||||||||||||||| Sbjct 1755 GCTTGCAACCGTAAGAGCAACCAGAAGAAC 1726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||||||| | |||||||||||| ||||| || |||||| |||| || | || Sbjct 894 GCAGACCGTGGTGCTTTCATCGACCAGTCTCAGTCGCTCAACATCCACATGAAGGACCCC 835 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGG-TGGAAGAAGGGACTCAAGACGGG 55905 ||| |||| | | | ||||| ||| || || |||||| ||||||||||| || Sbjct 834 AGCATGGGCAAGATCACCAGCATGCA-TTTCACAGGATGGAAGCTTGGACTCAAGACTGG 776 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 775 CATGTACTACCTGCGCAC 758 >seq3781 Length=37141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 || ||| |||||||||||| ||| |||||||| |||| || |||||| | |||||| Sbjct 13781 CGCGTGTAAATGTAACGAGGGCTGGCAGCATCGCTGCCTCCTTGAAGACGAGAACCGAAC 13840 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 ||||| || || | | ||| | |||||| | || ||| |||| ||||| | | Sbjct 13841 ATGCCACTGGGTTCAAGGCAGTTGATGTTGTTCGAACCGACATAGTTCTGAGCAAGGCCA 13900 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 | ||| || || || | | ||||| ||||| || ||||| | | | ||||| Sbjct 13901 ATAATGGTCTGCTGCAGTGACACATCACCGTGGTGGTATGCCGTTTCGCCGGAGACGTAA 13960 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539 ||||| || | | |||||| |||| |||| |||||| |||| |||| | Sbjct 13961 CCCGCGAGGTCTACAACCTTCTTGTCTTTGAC--CAGGTTACGTTTGAAAACACCATACA 14018 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | || ||||| || | |||||||| ||||| Sbjct 14019 TGACTTTGCGTTGGCCAGGCTTCAGGCCATC 14049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547175943788800