Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq629 145 2e-29 seq3611 143 6e-29 seq1912 125 2e-23 seq3571 123 6e-23 seq3618 93.3 1e-13 >seq629 Length=20836 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| || || || || |||| ||||| ||| || || Sbjct 19470 ACGAAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGT 19411 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || |||||||| || ||||| || Sbjct 19410 GCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCC 19351 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 19350 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 19291 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | || || | ||| | ||||| || Sbjct 19290 GGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATCTT 19246 >seq3611 Length=65567 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| || || || |||| ||||| |||| | ||| | ||||| Sbjct 3526 AGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCC 3585 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || ||||| || || ||||| || ||||| || Sbjct 3586 TCAAGCTGCTTACCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCC 3645 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || ||||| ||||| || | || || || | ||||| ||| Sbjct 3646 TGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTC 3705 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| | |||||| Sbjct 3706 TTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| || || |||| ||||| ||| || ||| Sbjct 3288 ACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGT 3347 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||| || || || ||||| || || |||||||| Sbjct 3348 GCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGAATACC 3407 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| |||||| ||||||||||| || | || || || | Sbjct 3408 CTCCTTATCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAG 3467 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| |||| ||| || | ||| | |||||| Sbjct 3468 AGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || ||||| || |||| ||||| |||| | || | ||||| Sbjct 3754 AGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 3813 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || ||||| || || ||||| || |||||||| Sbjct 3814 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 3873 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| || ||||||||||| |||| ||| || || | ||||| ||| Sbjct 3874 TGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCAAGAGTGATGGTC 3933 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 3934 TTGCCAGT 3941 >seq1912 Length=26273 Score = 125 bits (138), Expect = 2e-23 Identities = 200/281 (71%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || ||||||||||| || ||||| || ||||| ||| ||| ||| || | | Sbjct 23377 ACTTTATATTTAATTTTCTCATTATTTTCAGG-ATTATTAGGAACTGCATTCTCAGTTTT 23435 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 ||||| |||||| ||||| | ||| ||| ||| || | || |||| ||| | | Sbjct 23436 AATAAGATTAGAACTTAGCGG-TCCTGGTGTGCAA---TTTATTGCAAATAATCAATTAT 23491 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| |||| |||| || || || | | |||||||||||| | |||||||| | | Sbjct 23492 ATAACAGTATTGTTACTGCTCACGCAATATTAATGATTTTCTTTATGGTTATGCCTGCTT 23551 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || || || || | || | ||||||||| | || | |||||||||||| | Sbjct 23552 TAATAGGAGGATTTGGTAACTTCTTAATGCCTTTAATGGTAGGAGGTCCTGATATGGCAT 23611 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | |||||||||||||| |||||| |||| ||| Sbjct 23612 TCCCTAGATTAAACAATATAAGTTTCTGATTATTACCACCT 23652 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| || || ||||||||||||||||| | | |||||||| ||||| || | Sbjct 24057 TTCAGGATGTCCGAAGAATCAGAATAAATGTTGGAATAATATAGGATCTCCTCCTCCAGC 23998 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | || || || ||||||||| |||||||| ||||||| Sbjct 23997 TACTTCGAAGAATGAAGTATTAAAGTTTCTATCTGTTAAAA 23957 >seq3571 Length=7344 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| ||||||||||| Sbjct 6129 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 6188 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || |||||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 6189 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 6248 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| |||| || || || | ||||| |||||||| || || || || Sbjct 6249 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTT 6301 >seq3618 Length=19201 Score = 93.3 bits (102), Expect = 1e-13 Identities = 186/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 ||||||||| |||| || | ||||| ||||||| ||||| || | || ||| Sbjct 1730 TTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCA 1789 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGT-CGTTCTGGCCTT 193618 | || || | || || | |||||| | |||||| || | || || | || |||| Sbjct 1790 GTCTGTGCCTCAAGGATCGAGTACCAAAGCTTTTGAGCCTTGATGGTGCGCT-TGCCCTT 1848 Query 193619 TCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAG 193678 || |||||||||||||| ||||||| | ||||||| || | || ||| ||| | || Sbjct 1849 GCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTCCTCACCATAGCAGTCGGCAAG 1908 Query 193679 ACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCAT 193738 || || || || || || | ||| |||| || |||| | || || | |||||| Sbjct 1909 GCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTTTTCTCGACACGCTTCAT 1968 Query 193739 GAAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 |||||| || | |||||| ||| |||||| Sbjct 1969 GAAGAGATCCGGAATCCAAAGAGCGAGGAAAAG 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192441724384064