Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1916 87.8 1e-12 >seq1916 Length=63381 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 || |||||||| | ||||| || | ||| || |||||||||||||| || || ||| Sbjct 55313 GGTTCCCTCTCAACCTGAACTTGTAGAGCTTCAACATGGTCAAGGTAGACATGTGCGTCT 55372 Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742 |||| | ||| | ||||| || || | || | | | || || ||||||| || Sbjct 55373 CCCATGACGTGTGTTAAACTG-CCAGGAACCAGATCACAGGCATGCGCAATCATGTGGGT 55431 Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTG 29802 ||| || | || ||||||||||| || || || || || ||||| || | || | ||| Sbjct 55432 GAGCAGTGCATAACTGGCGATGTTGAATGGGACACCTAGACCCATATCGCAAGATCGCTG 55491 Query 29803 GTAGAGCTGGCA 29814 ||| |||||||| Sbjct 55492 GTACAGCTGGCA 55503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134212132416