Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3618 223 5e-53 >seq3618 Length=19201 Score = 223 bits (246), Expect = 5e-53 Identities = 626/949 (66%), Gaps = 34/949 (4%) Strand=Plus/Plus Query 76271 AGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATC 76330 ||||| | ||| || || || ||||| || ||||| | || | | ||| | || ||| Sbjct 1631 AGAGCCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATC 1690 Query 76331 TCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTA 76390 || ||||| || || | ||| || ||||| || | ||||||||||| ||| Sbjct 1691 TCAGTGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTG 1750 Query 76391 CATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGAT 76450 || | |||||| || || | || ||| | ||||| ||| |||||| || | || || Sbjct 1751 CAAGCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAG 1810 Query 76451 TTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTT---CTCTCTTTCATA-TTG 76506 | ||| | | ||| || || | ||| | ||| ||| || || || || Sbjct 1811 TACCAAAGCTTTTGAGCCTTGATGGTGCGCTTG---CCCTTGCCCTCCCTCTCGTACTTC 1867 Query 76507 T-GTATATAACCGTTCAAATTCATCTCCCCAAA-CA-TCATCCAAACCAGGACATTCATT 76563 | ||| | || |||||||| ||| ||| | || || | | ||||| || ||||| Sbjct 1868 TCGTACAATGCC--TCAAATTC--CTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATT 1923 Query 76564 CGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTAT 76623 |||||||| | || |||||| |||| || || || || ||||| |||||||| || || Sbjct 1924 AGGACACATGAGTGTCCACTCGCCATTTTTCTCGACACGCTTCATGAAGAGATCCGGAAT 1983 Query 76624 CCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAG 76683 ||| ||||| | || ||||| |||| | | || || || || ||||| || Sbjct 1984 CCAAAGAGCGAGGAAAAGATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAG 2043 Query 76684 ATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGG 76743 ||| |||||||| | | || || ||||| ||||| || || || || | |||| || Sbjct 2044 ATCGAGGAACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCACCAGG 2103 Query 76744 TCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG 76803 || ||||| || || || || | || | ||||||||| || | || | | ||| || Sbjct 2104 ACGCTTATTGCCACCTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGG 2163 Query 76804 AATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATT 76863 | || ||| || || || || || || || | ||| ||| ||| || ||||| Sbjct 2164 CACAAGGCCATTGGAGGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCG 2223 Query 76864 ACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGT 76923 || | ||||| || || || |||||||| ||||| | ||| || || | || Sbjct 2224 GTGAACATTGAGGCCAATGCCACCAGCCATTTTGGAGATCATAGCGCAAGTCTTGAGCGT 2283 Query 76924 GTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 76983 |||||||||||| || || || ||||| |||||| | ||||| ||| |||| | | Sbjct 2284 GTCATAGATGCCATCAATGCTGTCATCTTTCATGTCGACAAGAA---AGCAAGACGATAG 2340 Query 76984 ATGA---TGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTC 77040 ||| ||| || || ||||| || | || || || || |||||||| | || Sbjct 2341 CTGAGCTTGAGGGGTACCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCT 2400 Query 77041 AGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT------CCCATTGATGAATTCC 77094 || | || ||||| || |||||||| || |||| |||| |||| || Sbjct 2401 CGACATGAGGTTGTAGGTCTCAATAACGCGCTCAATATTGTCACCCCA--GATG----CC 2454 Query 77095 TACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAA 77154 |||||||| ||||| | ||| ||||| || || || ||| |||| || | || | Sbjct 2455 GACAGCGACGCGCATAATCATGTGCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAG 2514 Query 77155 CAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAA 77201 || ||||||| |||| || || || ||||| || | ||| ||||| Sbjct 2515 CAGGTATGATCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAA 2563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712882213201920