Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq629 168 1e-36 seq3611 161 2e-34 seq3571 147 5e-30 seq5020 125 1e-23 >seq629 Length=20836 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| Sbjct 19476 ACCACCACGAAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCT 19417 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || |||||||| || Sbjct 19416 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGG 19357 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 19356 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 19297 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||| ||||||||||| | ||||| ||||| |||||||| || Sbjct 19296 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATCTT 19246 >seq3611 Length=65567 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || || || || |||||||||||||| Sbjct 3283 CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTC 3342 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || || |||| || ||||| || ||| Sbjct 3343 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGA 3402 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||| ||||| || ||| | ||||| ||||| || | || || Sbjct 3403 ATACCCTCCTTATCCTGAATC-TTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAAC 3461 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||||||||| || |||| |||||| ||||| || ||||| Sbjct 3462 CTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || || || | || || || |||||||||||||| | Sbjct 3510 ACCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 3569 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || || ||||||| || ||||| || || Sbjct 3570 GAGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGTTGATCCGGGGG 3629 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || || ||||||| || ||| | ||||||||||| || | || || Sbjct 3630 AATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAAC 3689 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 3690 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || ||||| || | || ||| || |||||||||||||| | Sbjct 3738 ACCGCCACGGAGGCGGAGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 3797 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| || || || || || ||||||| || ||||| || || Sbjct 3798 AAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGG 3857 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||||| || ||| | ||||| ||||| || | |||||| Sbjct 3858 AATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGAC 3917 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 3918 CTCAAGAGTGATGGTCTTGCCAGT 3941 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || | || || || || |||||||| ||||| Sbjct 3055 CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTC 3114 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| | || || ||||| ||||||| || ||||| || ||| Sbjct 3115 AGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 3174 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||| ||||| || || | || || ||||| | ||||| Sbjct 3175 ATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGAC 3233 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| || || |||||||| Sbjct 3234 CTCCAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 3281 >seq3571 Length=7344 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || |||||||||||||| || || || || || |||||| Sbjct 6129 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 6188 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || |||||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 6189 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 6248 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| ||||| ||||| || || || |||||||| || Sbjct 6249 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACAAA 6307 >seq5020 Length=23815 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 |||||||||||| | |||||| |||| || || |||||||||| || ||| Sbjct 18751 GAAAAGGAGTTCCTCACTGACGCTCTTCCCTGTGCCCTCCTCGGCATGAACGCCACCCTC 18810 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| ||| || || || ||||| ||||| || | |||| || || || ||||||| Sbjct 18811 ATGCAGCAGTACATTGAGTTCGTCGCTGACCGCCTCCTCGTCGCTCTTGGCAACGAGAAG 18870 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 ||||| ||||||| ||||| |||| || |||||| ||| || || || || ||| Sbjct 18871 GTGTACAACTCCACCAACCCTTTCGACTTCATGGAGAACATCTCCCTGGGTGGCAAGACT 18930 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||||||| ||||||||| ||| || || | | | ||||| Sbjct 18931 AACTTCTTCGAGAAGCGTGTCGCCGACTACCAGAAGGCTGGTGT 18974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046660663157824