Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3611 122 6e-23 seq629 120 2e-22 seq3571 87.8 1e-12 >seq3611 Length=65567 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||||| ||||||||||| ||| || ||| | || || Sbjct 3300 CACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 3359 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || || |||| ||||| ||||| | || | ||| ||||| ||| Sbjct 3360 AAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 3419 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | |||||||| | || || ||||| | || |||||||| Sbjct 3420 AATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTGATCGTCTT 3479 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||||||||| Sbjct 3480 GCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| |||| ||| ||| | || || Sbjct 3529 ACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCA 3588 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||||| ||||| | || | || ||||| ||| Sbjct 3589 AGCTGCTTACCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGA 3648 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | || || ||||| | || || ||||| Sbjct 3649 ATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTG 3708 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||||||||| Sbjct 3709 CCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 95.1 bits (104), Expect = 9e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || ||||| ||||||||||| |||| || ||| | || || Sbjct 3757 ACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCA 3816 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||||| ||||| | || | || ||||| ||| Sbjct 3817 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGA 3876 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| |||||| ||||| | || || ||||| Sbjct 3877 ATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCAAGAGTGATGGTCTTG 3936 Query 44309 CCCGTGA 44315 || |||| Sbjct 3937 CCAGTGA 3943 >seq629 Length=20836 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| ||| || ||| | || || Sbjct 19457 ACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCA 19398 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||||| || || | || | || ||||| ||| Sbjct 19397 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 19338 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || || ||||| Sbjct 19337 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 19278 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||||||||||||||| ||||| Sbjct 19277 CCCGTGAGGGTCTTCACGAAGATCTGCAT 19249 >seq3571 Length=7344 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| | || || |||||||| || || |||| Sbjct 6127 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 6186 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||| || || | || | || ||||| ||| |||||| ||| || ||| Sbjct 6187 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 6246 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | ||| || ||||| | || || ||||| || || | ||||| || Sbjct 6247 --CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAAC 6304 Query 44326 GAAG 44329 ||| Sbjct 6305 AAAG 6308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359964707485152