Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001605845.1_202016-04-01] 5,856 sequences; 32,778,109 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3611 165 8e-36 seq629 152 5e-32 seq3571 127 2e-24 >seq3611 Length=65567 Score = 165 bits (182), Expect = 8e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||||||||| |||||||||||| Sbjct 3054 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCT 3113 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | ||||||||||||||| |||||||||||||| |||| ||| Sbjct 3114 CAGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGG 3173 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| || |||| || | | | |||||||| ||||| | Sbjct 3174 AATACCCTCCTTGTCCTGGATCTTGCTCTTC-ACATTGTCAATGGTGTCGCTGGACTCGA 3232 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| || || || || || || |||||||| || || ||||||||| Sbjct 3233 CCTCCAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCATG 3282 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || || ||||||||| ||||| ||||||||| Sbjct 3511 CCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 3570 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| || ||||| |||||||||||||| |||| |||| Sbjct 3571 AGAGTGCGACCATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 3630 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | |||| | ||| | | | |||||| |||||| || Sbjct 3631 ATGCCCTCCTTATCC-TGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAAC 3689 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| || ||||| Sbjct 3690 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 3737 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || || ||||||||||| ||||| |||||| Sbjct 3282 GCCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCT 3341 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || |||||||| || ||||| |||||||||||||| |||| || Sbjct 3342 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGTGG 3401 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||| ||| || || |||| ||| | | | ||||| ||||| | Sbjct 3402 AATACCCTCCTTATCCTGAATCTTGCTCTTC-ACGTTGTCGATGGTGTCAGATGACTCAA 3460 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || || ||||| ||||| ||||| || ||||| Sbjct 3461 CCTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 3509 Score = 125 bits (138), Expect = 7e-24 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | ||||| || || || |||||||| ||||| |||||||| Sbjct 3739 CCGCCACGGAGGCGGAGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 3798 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| |||||||||||||| |||| |||| Sbjct 3799 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 3858 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG 41781 | || |||||||||| ||| | |||| Sbjct 3859 ATGCCCTCCTTGTCC-TGAATCTTTG 3883 >seq629 Length=20836 Score = 152 bits (168), Expect = 5e-32 Identities = 153/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||| |||||||| | || || ||||||||||| ||||| Sbjct 19440 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 19381 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||||||||||||||||| ||||| || |||||||||| ||| || ||| ||| Sbjct 19380 GATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGT 19322 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| ||||||||||| | || || || |||||||| || ||||| | Sbjct 19321 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCA 19262 Query 41850 CGAAAATCTGCATGTT 41865 |||| |||||||| || Sbjct 19261 CGAAGATCTGCATCTT 19246 >seq3571 Length=7344 Score = 127 bits (140), Expect = 2e-24 Identities = 144/190 (76%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| | || || ||||||||||| ||||| | Sbjct 6127 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 6186 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 |||||||||||||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 6187 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 6246 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | ||||| ||||| ||||| | || || || || || || | |||||| || Sbjct 6247 CG--ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAAC 6304 Query 41851 GAAAATCTGC 41860 ||| |||| Sbjct 6305 --AAAGCTGC 6312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270159347200