Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9 104 2e-17 >seq9 Length=1624432 Score = 104 bits (114), Expect = 2e-17 Identities = 197/290 (68%), Gaps = 9/290 (3%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||| || || ||| | |||||||| ||||||||||| ||||| Sbjct 712602 ATGTATGTGTCGATCAGGAGAGAGTATGTCTCGGAGTGAATGTTCTCCATCATAATCTGG 712543 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || || | | ||| ||||| || ||| || || | || Sbjct 712542 AAACCGTAGAAGCAGCGAGCCTCAGGGACTTGCACTTCGGCGCTGAAGCGCTCAACCAGG 712483 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||| ||||||||||| || ||||| || ||||| || || ||||| || Sbjct 712482 TTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAAGCCAAGATGTGAGAGATGAAGTAC 712423 Query 17414 TTTTCGTCCGGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACT 17467 || ||||| | || ||| |||||| | | ||| ||||| | ||| | | Sbjct 712422 TTCTCGTCATCGTTCAG---GCGGTTGTTCCAGTCGTGAAGATCCTTGGAGAGATCGATT 712366 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || |||| ||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 712365 TCCTCGGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGAT 712316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545295941960