Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 199 5e-46 seq9 93.3 5e-14 >seq1 Length=5810324 Score = 199 bits (220), Expect = 5e-46 Identities = 796/1235 (64%), Gaps = 46/1235 (4%) Strand=Plus/Minus Query 53437 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 53496 ||| ||| ||| ||||| || || ||||||| ||| || || || | || || |||| Sbjct 2737204 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 2737146 Query 53497 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 53554 | || || || | | |||| || || ||||| || | ||||||||||| | |||| Sbjct 2737145 ACTCGAAAGGC-AGTCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 2737087 Query 53555 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 53614 || |||| || | | | || | | || || || | |||||| | || | ||| Sbjct 2737086 ATGGGTCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 2737027 Query 53615 ATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 53674 ||||| || ||||| || | || | |||| | || || | ||| || || || Sbjct 2737026 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 2736967 Query 53675 AATTGTCCATC----TATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACG 53728 || | |||| || | | | | | || || | ||| || || || ||||| Sbjct 2736966 AAGCATGCATCATCGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACA 2736907 Query 53729 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 53788 || ||||| | || | | | ||| | || |||||||||||||| || | ||| Sbjct 2736906 GCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATT 2736847 Query 53789 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGC 53848 || || | || | || || ||||| ||| || || ||||| || || |||||||| Sbjct 2736846 GTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGA 2736787 Query 53849 GTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA 53908 ||||||| ||| |||| | || | |||| | ||| | ||||||| || | Sbjct 2736786 TTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTCTGAGCCTTGATGGTG 2736727 Query 53909 GATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCC 53965 ||| | ||| || || ||||| |||||| ||||| || ||| | Sbjct 2736726 CGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCAC 2736672 Query 53966 CAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023 || | || | ||| ||||| || |||| |||||||| | | |||||| || | | Sbjct 2736671 CATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTCT 2736612 Query 54024 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083 | || || ||||| |||||||| |||||||||||||| | || ||||| | || | Sbjct 2736611 TTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCAC 2736552 Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 | ||||| || || ||||| |||||||||||| | | | || || |||| Sbjct 2736551 GAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCC 2736492 Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203 | ||||| | ||| |||| | | ||||| || || || || || || || | ||| | Sbjct 2736491 AGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACGTAGC 2736432 Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263 || ||||| || | || | | ||| || | || |||||||| | || ||||| | Sbjct 2736431 GGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGC 2736372 Query 54264 CGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGC 54321 ||| || || ||| | || ||||| | |||| || || || || || || Sbjct 2736371 CGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGC 2736314 Query 54322 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 54381 ||| || ||||| | ||||| || | ||| ||||||||||| || || || ||||| Sbjct 2736313 CATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATC 2736254 Query 54382 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAAA 54438 |||||| | |||| ||| |||| | | ||| || || || ||||| || Sbjct 2736253 TTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAA 2736197 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 | || || || ||||| || || | || || | || ||||| ||||| ||| | Sbjct 2736196 GAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAAC 2736137 Query 54499 TGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552 || |||| |||| |||| || || ||||| ||||| | ||||||||| Sbjct 2736136 GCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTG 2736083 Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612 || | ||||| |||||| ||| | || |||| ||| ||| |||| || || || Sbjct 2736082 TGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAA 2736023 Query 54613 ACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 54645 ||||| || | ||| ||||| || || ||||| Sbjct 2736022 GCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2735990 >seq9 Length=1624432 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| |||||||| || | | || | |||||||| || ||||| Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| ||||||||||| || ||||| || ||||| || || | || ||||| Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATG 24310 ||| || || || || || ||||||| || | | || | | | ||||| Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 |||||||| ||||||| ||||||||||| Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721251188560