Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09]
47 sequences; 32,403,370 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1 199 5e-46
seq9 93.3 5e-14
>seq1
Length=5810324
Score = 199 bits (220), Expect = 5e-46
Identities = 796/1235 (64%), Gaps = 46/1235 (4%)
Strand=Plus/Minus
Query 53437 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 53496
||| ||| ||| ||||| || || ||||||| ||| || || || | || || ||||
Sbjct 2737204 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 2737146
Query 53497 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 53554
| || || || | | |||| || || ||||| || | ||||||||||| | ||||
Sbjct 2737145 ACTCGAAAGGC-AGTCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 2737087
Query 53555 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 53614
|| |||| || | | | || | | || || || | |||||| | || | |||
Sbjct 2737086 ATGGGTCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 2737027
Query 53615 ATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 53674
||||| || ||||| || | || | |||| | || || | ||| || || ||
Sbjct 2737026 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 2736967
Query 53675 AATTGTCCATC----TATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACG 53728
|| | |||| || | | | | | || || | ||| || || || |||||
Sbjct 2736966 AAGCATGCATCATCGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACA 2736907
Query 53729 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 53788
|| ||||| | || | | | ||| | || |||||||||||||| || | |||
Sbjct 2736906 GCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATT 2736847
Query 53789 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGC 53848
|| || | || | || || ||||| ||| || || ||||| || || ||||||||
Sbjct 2736846 GTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGA 2736787
Query 53849 GTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA 53908
||||||| ||| |||| | || | |||| | ||| | ||||||| || |
Sbjct 2736786 TTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGCTTCTGAGCCTTGATGGTG 2736727
Query 53909 GATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCC 53965
||| | ||| || || ||||| |||||| ||||| || ||| |
Sbjct 2736726 CGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCAC 2736672
Query 53966 CAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023
|| | || | ||| ||||| || |||| |||||||| | | |||||| || | |
Sbjct 2736671 CATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTCT 2736612
Query 54024 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 54083
| || || ||||| |||||||| |||||||||||||| | || ||||| | || |
Sbjct 2736611 TTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCAC 2736552
Query 54084 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143
| ||||| || || ||||| |||||||||||| | | | || || ||||
Sbjct 2736551 GAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCC 2736492
Query 54144 ACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 54203
| ||||| | ||| |||| | | ||||| || || || || || || || | ||| |
Sbjct 2736491 AGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACGTAGC 2736432
Query 54204 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCC 54263
|| ||||| || | || | | ||| || | || |||||||| | || ||||| |
Sbjct 2736431 GGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGC 2736372
Query 54264 CGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGC 54321
||| || || ||| | || ||||| | |||| || || || || || ||
Sbjct 2736371 CGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGC 2736314
Query 54322 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 54381
||| || ||||| | ||||| || | ||| ||||||||||| || || || |||||
Sbjct 2736313 CATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATC 2736254
Query 54382 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAAA 54438
|||||| | |||| ||| |||| | | ||| || || || ||||| ||
Sbjct 2736253 TTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAA 2736197
Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498
| || || || ||||| || || | || || | || ||||| ||||| ||| |
Sbjct 2736196 GAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAAC 2736137
Query 54499 TGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552
|| |||| |||| |||| || || ||||| ||||| | |||||||||
Sbjct 2736136 GCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTG 2736083
Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612
|| | ||||| |||||| ||| | || |||| ||| ||| |||| || || ||
Sbjct 2736082 TGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAA 2736023
Query 54613 ACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 54645
||||| || | ||| ||||| || || |||||
Sbjct 2736022 GCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2735990
>seq9
Length=1624432
Score = 93.3 bits (102), Expect = 5e-14
Identities = 147/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193
||| || || ||| ||| |||||||| || | | || | |||||||| || |||||
Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866
Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253
|| ||||| ||||||||||| || ||||| || ||||| || || | || |||||
Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806
Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG---CTGTCATG 24310
||| || || || || || ||||||| || | | || | | | |||||
Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746
Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTT 24340
|||||||| ||||||| |||||||||||
Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721251188560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |