Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 165 8e-36 seq6 138 1e-27 seq8 131 2e-25 seq2 123 3e-23 >seq9 Length=1624432 Score = 165 bits (182), Expect = 8e-36 Identities = 210/286 (73%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 712316 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAAATCGATCTC 712375 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| ||||||| | ||| ||||||| ||||| | |||||| Sbjct 712376 TCCAAGGATCTTCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 712435 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || ||||| ||| |||||||||||||||||||| ||||| ||||| Sbjct 712436 CACATCTTGGCTTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTGGTTGAGCGC 712495 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | || ||||| || | ||||| || ||||||||||| || ||||| || Sbjct 712496 TTCAGCGC-CGAAGTGCAAGTCCCTGAGGCTCGCTGCTTCTACGGTTTCCAGATTATGAT 712554 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || ||| |||||||| ||| Sbjct 712555 GGAGAACATTCACTCCGAGACATACTCTCTCCTGATCGACACATAC 712600 Score = 140 bits (154), Expect = 3e-28 Identities = 307/455 (67%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || ||||| || | || | | ||||||| |||||| Sbjct 712717 AGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACTCATCCTTCGGTCAGCGCC 712776 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| || || ||||| | ||||| || |||||| |||| || | Sbjct 712777 TCGTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGTGCTTTCGCTTCCATCTTCT 712836 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||||||||| || || |||||| ||||||||| ||||| | | Sbjct 712837 GGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCCAACGAGCTTATCTCTCGTG 712896 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | |||||||| || ||||||||||||| | || | || || | | || || | Sbjct 712897 ATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTTCACTCCCACCTGAAGAACCGCCCCA 712956 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | | | ||| || |||| || || || | ||| || ||||||| Sbjct 712957 GCAAGCAGGTCATTGAGGATATTATCACTGAGGCCGTGGTTTACGAAAAGGAGTTCCTCA 713016 Query 117282 CCGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || || | | || |||| || || || | || || | | ||| ||| ||||| Sbjct 713017 CTGATGCTCTTCCCTGTGC-CCTCCTCGGCATGAA-CGCCACCCTCATGCAGCAGTACAT 713074 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||||| ||| | || || ||| || | | || ||| |||||| | | Sbjct 713075 TGAGTTCGTCGCTGACCGCCTCCTCGTCGCTCTTGGCAACGAGAAGGTGTACAACTCCAC 713134 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||| ||| | ||||||| ||| Sbjct 713135 CAACCCTTTCGACTTCATGGAGAACATCTCCCTGG 713169 >seq6 Length=2850886 Score = 138 bits (152), Expect = 1e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 2704131 AAGATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 2704190 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 2704191 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 2704249 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| ||| ||||| ||||| || || | |||||||| | |||||| Sbjct 2704250 CCAACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTA 2704309 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| | || || || || || Sbjct 2704310 CAACATCCAGAAGGAGTCTACCCTCCACCTCGT 2704342 >seq8 Length=2135075 Score = 131 bits (144), Expect = 2e-25 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| |||||||| | || |||||| || |||||| | | | |||| ||||| Sbjct 384712 TCACTGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGACACCATCGACAACG-TCAAG 384770 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 ||| |||| ||||| |||||||| ||| |||| || || || || |||| ||| ||| Sbjct 384771 TCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGATCTTCGCTGGC 384830 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | |||||||| ||||||||||||||||||||| | || || Sbjct 384831 AAGCAGCTTGAGGATGGTCGCACCCTTTCCGACTACAACATCCAGAAGGAATCTACCCTC 384890 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | ||| | | ||||| Sbjct 384891 CACCTGGTTCTCCGCCTCCGTGGCGG 384916 Score = 123 bits (136), Expect = 3e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| |||||||| | || || || | | Sbjct 384918 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGTCGTCT 384977 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| |||| || || |||||||| ||| |||| || Sbjct 384978 GACACTATCGACAACG-TCAAGTCAAAGATTCAGGATAAGGAGGGCATTCCCCCGGATCA 385036 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 385037 ACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTGAGCGACTACAA 385096 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || ||||| Sbjct 385097 CATCCAGAAGGAGTCTACTCTTCACCTAGT 385126 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| ||||||||| | || ||||| ||| | Sbjct 385374 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCAGC 385433 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||| || ||| |||| || Sbjct 385434 GACACCATTGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCGGATCAA 385493 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||| |||| || | ||||| || | |||||| ||| Sbjct 385494 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAC 385553 Query 40870 ATCCAGAAGGAG 40881 |||||||||||| Sbjct 385554 ATCCAGAAGGAG 385565 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| || || | | Sbjct 385146 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACAATCACTCTCGAGGTTGAGTCATCT 385205 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| || || ||||| || ||| |||| || Sbjct 385206 GACACCATCGACAACG-TGAAGAGCAAGATTCAGGATAAGGAGGGTATTCCCCCGGATCA 385264 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| || || ||||| || || | ||||| || | ||||||||| Sbjct 385265 ACAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGAGCGACTACAA 385324 Query 40869 CATCCAGAAGGAG 40881 ||||||||||||| Sbjct 385325 CATCCAGAAGGAG 385337 >seq2 Length=4113143 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 || || || ||| | || ||||| ||||||||| |||| ||||| || | |||| | | Sbjct 379989 TTTGTTAAGACGTTAACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 379930 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || || || Sbjct 379929 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 379870 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | ||||||||| ||||||||||||||||||| Sbjct 379869 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 379810 Query 40879 G 40879 | Sbjct 379809 G 379809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218897308720