Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 116 8e-21 >seq1 Length=5810324 Score = 116 bits (128), Expect = 8e-21 Identities = 223/322 (69%), Gaps = 10/322 (3%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 |||||| |||||| | |||| | ||||| | ||| | | ||||| ||||| || Sbjct 2735972 CTGGACTCCGCGATCGTGTACGACCGTGATTTCAACTACCAATACTTTGGCTTCAAGACC 2736031 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 |||||| ||| || || ||||| | | |||||||| || || || ||||||||| Sbjct 2736032 CTGGAGCGATCATACCTGCTCAAGCTCAACGGCAAGATTGTTGAGCGTCCACAGCACATG 2736091 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACG 248958 | ||||| || |||||||| || | || ||||| | ||| |||| | ||||| Sbjct 2736092 ATTATGCGCGTCGCTGTCGGCAT---CTGGGGTGACAATATTGAGCGCGTTATTGAGACC 2736148 Query 248959 TACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGG 249017 |||| | ||| | | | | | | || || ||| |||| ||||||||||| || || Sbjct 2736149 TACAACCTCATGTCGAGCAAGTTTT-TCACTCACGCCTCACCCACGCTCTTCAATGCTGG 2736207 Query 249018 TA-CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCG 249076 || || |||| |||||| || ||||||||| | | |||| |||| ||| | | Sbjct 2736208 TACCCCTCAA-GCTCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATGACAGCATTG 2736266 Query 249077 ACGGCATTTATGACACGCTTAA 249098 | ||||| ||||||||||| || Sbjct 2736267 ATGGCATCTATGACACGCTCAA 2736288 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| || ||| | || || | ||||||||||| || || |||||||| || ||||| || Sbjct 2982529 CCTCCCCCATCTCCTCCTCTATGGTCCTCCCGGTACCGGAAAGACGTCCACGATCCTCGC 2982470 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || || || | | | || | || ||||||| | | |||||||||||||| || Sbjct 2982469 CCTCGCGCGGCGCATCTACGGTGCGGCGAACATGCGGCAAATGGTGCTCGAGCTGAATGC 2982410 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCA 254172 ||| ||||| || || | ||||| |||||||| |||||||||| ||| ||| Sbjct 2982409 TTCCGACGAGCGTGGCATCGACGTGGTCCGCGAGCAGATCAAGACGTTCGCCA 2982357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765753391296