Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8 136 3e-27 seq6 120 2e-22 >seq8 Length=2135075 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||| ||||| |||||| |||| |||| | || ||| Sbjct 385582 ACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCATCCTCC 385523 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || |||||||| |||| |||||||| || || || | ||||||||||||| Sbjct 385522 AACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGG 385463 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||||| ||| || |||||| Sbjct 385462 ATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTG 385403 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| |||||||| |||||| Sbjct 385402 CCGGTGAGCGTCTTGACAAAGATCTGCATG 385373 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||| |||||||||||| |||| ||| | || || Sbjct 385354 ACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCA 385295 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| |||||||| || || || | ||||||||| ||| | Sbjct 385294 AGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTATCCTGA 385235 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||| | || || |||||| Sbjct 385234 ATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTGATTGTCTTG 385175 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || ||||||||||| Sbjct 385174 CCGGTCAGAGTCTTGACGAAGATTTGCAT 385146 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| |||| |||| | || || || || || || ||||| Sbjct 385109 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 385050 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| |||||||| || || || | |||||||| ||| ||| ||| ||| || Sbjct 385049 GATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTTGACGTT 384990 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| ||| ||||| | || || |||||||| |||| |||||| || Sbjct 384989 GTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGAC 384930 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 384929 GAAGATTTGCAT 384918 >seq6 Length=2850886 Score = 120 bits (132), Expect = 2e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| |||| ||| | || || || || || || ||||| Sbjct 2704325 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 2704266 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||||||||| || || | |||||||||||| || || ||| || Sbjct 2704265 GATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 2704206 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||||||| | ||| || ||||| ||||| || |||||||| Sbjct 2704205 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCAC 2704146 Query 45325 AAAGATTTGCATGTTGCCT 45343 ||||| ||||| |||||| Sbjct 2704145 GAAGATCTGCATCTTGCCT 2704127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074973695987