Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9 120 6e-22 seq1 105 1e-17 >seq9 Length=1624432 Score = 120 bits (132), Expect = 6e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||| ||||| ||||| || || ||||| || ||||| ||||| ||||| |||||| Sbjct 712779 GTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGTGCTTTCGCTTCCATCTTCTGG 712838 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||||||||| | |||||| ||| | || ||| | || Sbjct 712839 CTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCCAACGAGCTTATCTCTCGTGAT 712898 Query 102038 GAAGGTCTTCATCGCGACTTTGCATG 102063 || |||||||| ||||||||| || Sbjct 712899 GAGGGTCTTCACACCGACTTTGCCTG 712924 >seq1 Length=5810324 Score = 105 bits (116), Expect = 1e-17 Identities = 189/271 (70%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833 |||| | || ||| | || ||||| |||||||||| || || ||| || || Sbjct 2736339 TGAACATTGAGGCCAATGCCACCAGCCATCTTGGAGATCATAGCGCAAGTCTTGAGCGTG 2736280 Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGG 94893 ||||| || || |||||||| ||||||| | | | | ||| ||||| || || || || Sbjct 2736279 TCATAGATGCCATCAATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGA 2736220 Query 94894 GGTGTGACTGTT-CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952 | | ||| | | ||| ||| || || ||||| || || || || ||| | | ||||| Sbjct 2736219 GCT-TGAGGGGTACCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGA 2736161 Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGAT-GTCTGATCCGTGAATGCCGACAGCCA 95011 |||||| | || || ||||| || | || | | | || | ||||||||||| | Sbjct 2736160 CATGAGGTTGTAGGTCTCAATAACGCGCTCAATATTGTCACCCCAG-ATGCCGACAGCGA 2736102 Query 95012 CACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 | ||||||||||||| ||| || |||||||| Sbjct 2736101 CGCGCATAATCATGTGCTGTGGACGCTCAAC 2736071 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 94390 TTACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACG 94449 || || ||||| || ||| || ||||||||||| |||| ||| || || |||| | | Sbjct 2736723 TTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTCCTCACCATAGCAG 2736664 Query 94450 TCGGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTT---C 94506 |||| ||||||||||||||| | || ||||| || | ||| || ||| ||| Sbjct 2736663 TCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCA---CTCGCCATTCTTTTCG 2736607 Query 94507 ACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | || |||||||||||| | | ||| | ||| |||||||||| Sbjct 2736606 ACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATC 2736560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583404084885