Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 206 3e-48 seq9 107 2e-18 >seq1 Length=5810324 Score = 206 bits (228), Expect = 3e-48 Identities = 795/1232 (65%), Gaps = 40/1232 (3%) Strand=Plus/Minus Query 62675 TAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCT 62734 ||| ||| ||| ||||| || |||||||||| ||| || || || | || || || Sbjct 2737204 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGCGA 2737145 Query 62735 ATCAAATGGATAATTTAAGAG-AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62793 || || || | | |||| || || ||||| || | ||||||||||| | ||||| Sbjct 2737144 CTCGAAAGGC-AGTCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCGA 2737086 Query 62794 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62853 | |||| || | | | || | | || || || | |||||| | || | ||| | Sbjct 2737085 TGGGTCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCGA 2737026 Query 62854 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62913 |||| || |||||||| | || | |||| | || || | ||| || || || | Sbjct 2737025 TAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCGA 2736966 Query 62914 ATCGCCCATC----TATTACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGG 62967 | | |||| || | | | | | || || | ||| || || || || || | Sbjct 2736965 AGCATGCATCATCGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACAG 2736906 Query 62968 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAG 63027 | ||||| | || | | | ||| | || |||||||||||||| || | ||| | Sbjct 2736905 CAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATTG 2736846 Query 63028 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAG 63087 | || | || | || || ||||| ||| || || ||||| || || ||||||||| Sbjct 2736845 TACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGAT 2736786 Query 63088 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATA 63146 ||||||| ||| |||| | || | |||| | ||| | | || ||||||| || | Sbjct 2736785 TACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAA-GCTTCTGAGCCTTGATGGTG 2736727 Query 63147 GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206 ||| | | || || ||||| |||||| || || || ||| ||| Sbjct 2736726 CGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCACCAT 2736669 Query 63207 A-CATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63264 | || | ||| | ||| || |||| |||||||| | | |||||| || | | | Sbjct 2736668 AGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTCTTTT 2736609 Query 63265 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTAT 63324 || || ||||| |||||||| |||||||||||||| | || ||||| | | | | Sbjct 2736608 CGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCACGAA 2736549 Query 63325 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63384 ||||| || || ||||| |||||||||||| | | | || || ||||| | Sbjct 2736548 CCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCCAGG 2736489 Query 63385 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63444 |||| | ||| ||||| | | ||||| || || || || || || || | ||| | | Sbjct 2736488 GTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACGTAGCGGG 2736429 Query 63445 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63504 | ||||| || | || | | ||| || | || || || || | || ||||| |||| Sbjct 2736428 CAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGCCGG 2736369 Query 63505 AGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCAT 63562 || || ||| | || ||||| | |||| || || || || || ||||| Sbjct 2736368 CAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGCCAT 2736311 Query 63563 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGAT 63622 || ||||| | ||||| || | ||||||||||||||| || ||||| ||||| | Sbjct 2736310 CTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATCTTT 2736251 Query 63623 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGAGTAGTTCCCGCATTAAATAA 63679 ||||| | |||| ||| |||| | | ||| ||| || || ||||| || | Sbjct 2736250 CATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAAGAG 2736194 Query 63680 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63739 || || || ||||| || || | || || | || ||||| ||||||||| | Sbjct 2736193 CGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAACGCG 2736134 Query 63740 GTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || |||| |||| |||| || || ||||| ||||| | ||||||||| || Sbjct 2736133 CTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTGTGG 2736080 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 | |||||||| ||| ||| | || | || ||| ||| |||| || || || || Sbjct 2736079 ACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAAGCC 2736020 Query 63854 AAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63883 ||| || | ||| ||||| || || ||||| Sbjct 2736019 AAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2735990 >seq9 Length=1624432 Score = 107 bits (118), Expect = 2e-18 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| |||||||| || | | || | ||||| || || ||||| Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||||||||| || ||||| || ||||||||||| | ||| ||||| Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATG 33757 || || || || ||||| ||||||| || | || || | | | ||||| Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 |||||||| ||||||| ||||||||||| Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817229982160