Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 212 8e-50 seq9 98.7 1e-15 >seq1 Length=5810324 Score = 212 bits (234), Expect = 8e-50 Identities = 803/1236 (65%), Gaps = 48/1236 (4%) Strand=Plus/Minus Query 65468 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 65527 ||| ||| ||| ||||| || || ||||||| ||| || || || | || || |||| Sbjct 2737204 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 2737146 Query 65528 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 65585 | || || || | | |||| || || ||||| || | ||||||||||| | |||| Sbjct 2737145 ACTCGAAAGGC-AGTCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 2737087 Query 65586 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 65645 || |||| || | | | || | | || || || | |||||| | || | ||| Sbjct 2737086 ATGGGTCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 2737027 Query 65646 ATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 65705 ||||| || |||||||| | || | |||| | || || | ||| || || || Sbjct 2737026 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 2736967 Query 65706 AATC--GC-TCATC-TATTACAAACATGTT--CAATGCAACAGATGCCAGATTACAAACG 65759 || | || ||||| || | | | | | || || | ||| || || || ||||| Sbjct 2736966 AAGCATGCATCATCGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACA 2736907 Query 65760 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 65819 || ||||| | || | | | ||| | || |||||||||||||| || | ||| Sbjct 2736906 GCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATT 2736847 Query 65820 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 65879 || || | || | || || ||||| ||| || || ||||| || || ||||||||| Sbjct 2736846 GTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGA 2736787 Query 65880 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTAT 65938 ||||||| ||| |||| | || | |||| | ||| | | || ||||||| || | Sbjct 2736786 TTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAA-GCTTCTGAGCCTTGATGGT 2736728 Query 65939 AGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCC 65995 ||| | ||| || || ||||| |||||| || || || ||| Sbjct 2736727 GCGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCA 2736673 Query 65996 CCAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 66053 ||| | || | ||| ||||| || |||| |||||||| | | |||||| || | Sbjct 2736672 CCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTC 2736613 Query 66054 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTT 66113 | | || || ||||| |||||||| |||||||||||||| | || | ||| | || Sbjct 2736612 TTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCA 2736553 Query 66114 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGC 66173 | | ||||| || || ||||| |||||||||||| | | | || | ||| Sbjct 2736552 CGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGC 2736493 Query 66174 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 66233 || ||||| | ||| ||||| | | ||||| || || || || || || || | ||| Sbjct 2736492 CAGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACGTAG 2736433 Query 66234 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 66293 | || ||||| || | || | | ||| || | || |||||||| || || ||||| Sbjct 2736432 CGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTG 2736373 Query 66294 CCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTG 66351 |||| || || ||| | || ||||| | |||| || || || || || | Sbjct 2736372 CCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAG 2736315 Query 66352 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 66411 |||| || ||||| | ||||| || | ||| ||||||||||| || || || |||| Sbjct 2736314 CCATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCAT 2736255 Query 66412 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAA 66468 | |||||| | |||| ||| |||| | | ||| || || || ||||| | Sbjct 2736254 CTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGA 2736198 Query 66469 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 66528 | | || || || ||||| || || | || || | || ||||| ||||||||| Sbjct 2736197 AGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAA 2736138 Query 66529 CTGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 66582 | || |||| |||| |||| || || ||||| ||||| | |||||||| Sbjct 2736137 CGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCT 2736084 Query 66583 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 66642 | || | ||||| |||||| ||| | || | || ||| ||| |||| || || | Sbjct 2736083 GTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGA 2736024 Query 66643 AACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 66676 | ||||| || | ||| ||||| || || ||||| Sbjct 2736023 AGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2735990 >seq9 Length=1624432 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||| ||| |||||||| || | | || | |||||||| || ||||| Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| ||||||||||| || ||||| || ||||| || || | || ||||| Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCAC-TGTCATG 36333 ||| || || || || || ||||||| || | || || | | | | ||||| Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 |||||||| ||||||| ||||||||||| Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172413323480