Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 219 6e-52 seq9 102 1e-16 >seq1 Length=5810324 Score = 219 bits (242), Expect = 6e-52 Identities = 807/1239 (65%), Gaps = 54/1239 (4%) Strand=Plus/Minus Query 79347 TAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCT 79406 ||| || ||| ||||| || || || |||| ||| ||||| || | || || |||| Sbjct 2737204 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 2737146 Query 79407 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 79464 | || || || | | |||| || || ||||| || | ||||||||||| | |||| Sbjct 2737145 ACTCGAAAGGC-AGTCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 2737087 Query 79465 ATAGGTCTATGTCTCTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATC 79523 || |||| || | | | || | || | || || || | |||||| | || | ||| Sbjct 2737086 ATGGGTCGGTGACGCATGTT-GCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATC 2737028 Query 79524 TATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC 79583 ||||| || |||||||| | || | |||| | || || | || || || || Sbjct 2737027 GATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTC 2736968 Query 79584 AAATCGTCCATC----TATTACAAACATGTT--CAACGCGACAGATGCCAGATTACAAAC 79637 || | | |||| || | | | | | || || | ||| || || || ||||| Sbjct 2736967 GAAGCATGCATCATCGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAAC 2736908 Query 79638 GGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAAT 79697 || ||||| | || | | | ||| | || || |||||||| ||||| | || Sbjct 2736907 AGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGAT 2736848 Query 79698 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGG 79757 || || | || | || || ||||| ||| || || ||||| || || ||||| || Sbjct 2736847 TGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGG 2736788 Query 79758 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTA 79816 | ||||||| ||| |||| | || | |||| | ||| | | || ||||||| || Sbjct 2736787 ATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAA-GCTTCTGAGCCTTGATGG 2736729 Query 79817 TAGACTTGTATCTCTTT---TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTC 79873 | |||| | ||| || || ||||| | || ||| || || || ||| Sbjct 2736728 TGCGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTC 2736674 Query 79874 CCCAAA-CA-TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATC 79931 ||| | || ||| | | ||||| || || | ||||||||| | | |||||| |||| Sbjct 2736673 ACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCAT- 2736615 Query 79932 ATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 79989 || ||| || || ||||| |||||||| |||||||||||||| | || ||||| | | Sbjct 2736614 -TCTTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGG 2736556 Query 79990 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 80049 | | | |||||| || || ||||| |||||||||||| | | | || || Sbjct 2736555 GCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAG 2736496 Query 80050 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATG 80109 ||||| ||||| | ||| ||||| | | || || || || || || || || || | | Sbjct 2736495 TGCCAGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACG 2736436 Query 80110 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 80169 || | || ||||| || | || | | ||| || | || |||||||| || || ||| Sbjct 2736435 TAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTG 2736376 Query 80170 GTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCC 80227 || |||| || || ||| | || ||||| | |||| || || || || | Sbjct 2736375 GTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCAC 2736318 Query 80228 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTAT 80287 | ||||| || ||||| | ||||| || | ||| ||||||||||| || ||||| | Sbjct 2736317 CAGCCATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGT 2736258 Query 80288 CATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCAT 80344 |||| |||||| | |||| ||| |||| | | ||| || || || |||| Sbjct 2736257 CATCTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCAT 2736201 Query 80345 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAA 80404 | || | || || || ||||| || || | || |||| || ||||| ||||||| Sbjct 2736200 TGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAA 2736141 Query 80405 TAGCTGATTCTATAT------CCCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 || | || |||| |||| |||| || || ||||| ||||| | ||||| Sbjct 2736140 TAACGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGT 2736087 Query 80459 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTT 80518 |||| || | ||||| |||||| || | || | || ||| ||| |||| || | Sbjct 2736086 GCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCT 2736027 Query 80519 TAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 80555 | || ||||| || | ||| ||||| || || ||||| Sbjct 2736026 TGAAGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2735990 >seq9 Length=1624432 Score = 102 bits (112), Expect = 1e-16 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| ||| |||||||| || | | || || |||||||| || ||||| Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| ||||||||||| || ||||| || ||||| || || | || ||||| Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG---CTGTCATG 50135 || || || || || || |||||||| || | || || | | | ||||| Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||||||| ||||||| ||||||||||| Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268378017080