Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 214 2e-50 seq9 93.3 6e-14 >seq1 Length=5810324 Score = 214 bits (236), Expect = 2e-50 Identities = 796/1225 (65%), Gaps = 52/1225 (4%) Strand=Plus/Minus Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||| || || || |||| ||| ||||| || | || || || || || || | Sbjct 2737191 TAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTCAGGCGACTCGAAAGGC-AG 2737133 Query 71503 TTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCT 71561 | |||| || || ||||| || | |||||||| || | |||||| |||| ||| | Sbjct 2737132 TCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCGATGGGTCGGTGACG 2737073 Query 71562 CTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 | | || | || | || || || | |||||| | || | ||| ||||| || |||| Sbjct 2737072 CATGTT-GCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCGATAATCTTGTTGA 2737014 Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC-- 71678 |||| | || | |||| | || || | || || || || || | |||| Sbjct 2737013 GATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCGAAGCATGCATCAT 2736954 Query 71679 --TATT--ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 || | | ||| | || || | ||| || || || ||||| || ||||| | || Sbjct 2736953 CGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAG 2736894 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | | ||| | || || ||||||||||| || | ||| || || | || | Sbjct 2736893 GAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCT 2736834 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 || || ||||| ||| || || ||||| || || || || ||| ||||||| ||| Sbjct 2736833 TCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAG 2736774 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTC 71913 |||| | || | |||| | ||| | | || ||||||| || | |||| | | Sbjct 2736773 TCTGTGCCTCAAGGATCGAGTACCAAA-GCTTCTGAGCCTTGATGGTGCGCTTG---CCC 2736718 Query 71914 TTT---TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCA-AGCATT-GT 71968 || || || ||||| | || ||| || || || ||| ||| |||| | | Sbjct 2736717 TTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCACCATAGCAGTCGG 2736660 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCG 72026 | | ||||| || ||||| |||||||| | || |||||| |||| || ||| || || Sbjct 2736659 CAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCAT--TCTTTTCGACACG 2736602 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 ||||| |||||||| |||||||||||||| | || ||||| | || | | |||||| Sbjct 2736601 CTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCACGAACCTCCTC 2736542 Query 72087 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 72146 || || ||||| |||||||||||| | | | || || ||||| ||||| | Sbjct 2736541 TTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGCCAGGGTTCAAG 2736482 Query 72147 GTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 72206 ||| ||||| | | || || || || || || || || || | ||| | || ||||| Sbjct 2736481 GTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACGTAGCGGGCAGTGTT 2736422 Query 72207 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATA 72266 || | || | | ||| || | || |||||||| | || ||||| |||| || || Sbjct 2736421 GTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTGCCGGCAATGTA 2736362 Query 72267 GCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 72324 ||| | || ||||| || |||| || || || || || ||||| || ||| Sbjct 2736361 AGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAGCCATCTTGGAG 2736304 Query 72325 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 72384 || | ||||| || | ||| ||||||||||| || || || ||||| |||||| Sbjct 2736303 ATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCATCTTTCATGTCG 2736244 Query 72385 AGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGA 72441 | |||| ||| |||| | | ||| || || || ||||| || | || || Sbjct 2736243 ACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGAAGAGCGTGGGT 2736187 Query 72442 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 72501 || ||||| || || | || |||| || ||||| ||||||||| | || ||| Sbjct 2736186 GAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAACGCGCTCAATA 2736127 Query 72502 T------CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 | |||| |||| || || ||||| ||||| | ||| ||||| || | ||| Sbjct 2736126 TTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCTGTGGACGCTCA 2736073 Query 72556 ACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 || |||||| || | || | || ||| ||| |||| || || || ||||| || Sbjct 2736072 ACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGAAGCCAAAGTAT 2736013 Query 72616 TTGTA--TGAAAAGTCTCGTTCGTA 72638 | ||| ||||| || || ||||| Sbjct 2736012 TGGTAGTTGAAA--TCACGGTCGTA 2735990 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || |||||||| |||| || || || | ||| || || ||||||||||| || || || Sbjct 2737836 GTGAACTGAATCGGAGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCAGTCTTGAGT 2737777 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || || ||||||| |||||||| || || | ||| ||| || || ||| Sbjct 2737776 CCAAGCTTCCATCCTGTGAAATGCATGCTGGTGATCTTGCCCATGCTGGGGTCCTTCATG 2737717 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || || | ||||||| || |||||||| || || | |||||| ||||| | | Sbjct 2737716 TGGATGTTGAGCGACTGAGACTGGTCGATGAAAGCACCACGGTCTGCCGCCATCTGCACA 2737657 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || | ||| ||||||| ||| || || | ||| | ||| || || | | Sbjct 2737656 ATTTGGCGCTGAGAAATCTCCCAAACAGTCTTGTACAGGGCCTTGACATCGTCAGGGATG 2737597 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 || | | ||||| ||||| || || ||||| || | ||||| || Sbjct 2737596 TTGGGGATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTTTTCAT 2737547 >seq9 Length=1624432 Score = 93.3 bits (102), Expect = 6e-14 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||| ||| ||||||||||| | | || | |||||||| || ||||| Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||||||||| || ||||| || || || || || | || ||||| Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCAC-TGTCATG 42240 || || || || || || ||||||| || | || || | | | | ||||| Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 |||||||| ||||||| ||||||||||| Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138805705720