Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-26 seq9 125 1e-23 >seq1 Length=5810324 Score = 132 bits (146), Expect = 7e-26 Identities = 360/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | ||| |||||| ||||| |||||| | | | ||| || || | || Sbjct 2736374 ACCAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCC-CG 2736432 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || || |||||||| || || ||||| | ||| | ||| | ||||| || Sbjct 2736433 CTACGTTGACCAAGGTGGCAATAAGCGTCCTGGCGCCTTCGCCATTTACCTTGAACCCTG 2736492 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||| | ||||| ||||| || |||| | || || ||| |||| || |||| || Sbjct 2736493 GCACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCG 2736552 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| | || | || || || ||| | || ||| | ||||||||||| ||| | | Sbjct 2736553 TGCCCGTGATCTTTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAAAA 2736612 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 |||| | |||| || ||||| || | || || || || |||| |||| || Sbjct 2736613 GAATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTGCTATGG 2736672 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACGAG 97164 || || |||||||| |||| | |||||| |||||| | | | || | Sbjct 2736673 TGAGGAATTTGAGGCATTGTACGAGAAGTACGAGAGGGAGGGCAAGGGCAAGCGCACCA- 2736731 Query 97165 TCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | || | |||| || ||| | | ||| | ||| ||| |||||||| | ||| Sbjct 2736732 TCAAGGCTC-AGAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAATCCA 2736790 Query 97224 TACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATC 97283 | ||| ||||||||||| | || || || |||||||| || | || || ||| Sbjct 2736791 TTCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGGTACAATC 2736850 Query 97284 AAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTT 97343 ||||||| || ||||| || || | ||||| | |||| |||||| || ||| Sbjct 2736851 CGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGCTGTT 2736910 Query 97344 TGC 97346 ||| Sbjct 2736911 TGC 2736913 >seq9 Length=1624432 Score = 125 bits (138), Expect = 1e-23 Identities = 208/293 (71%), Gaps = 12/293 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| ||||||| || ||||| | ||| || ||||||| Sbjct 712316 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAAATCGATCTC 712375 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||| || |||| ||| | | || ||| || ||| ||||| || || Sbjct 712376 TCCAAGGATCTTCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 712431 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGA 125193 || ||||| ||||| ||||| || | ||| || || ||||||||||| || || ||||| Sbjct 712432 CTCTCACATCTTGGCTTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTGGTTGA 712491 Query 125194 CACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATC 125252 || ||| || || | || |||| ||| ||||| ||||| ||||| || Sbjct 712492 -GCGCTTCAGCGCCGAAGTGCAAGTCCCTGAGG-CTCGCTGCTTCTACGGTTTCCAGATT 712549 Query 125253 ATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 ||||| |||||| | ||||| || | |||||| ||||| |||| ||||| Sbjct 712550 ATGATGGAGAACATTCACTCCGAGACATACTCTCTCCTGATCGACACATACAT 712602 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 125390 GTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||||| | |||| | || || || | || | | || || || ||||| || || || Sbjct 712739 GTGGATTGCTGACAAGAACTCATCCTTCGGTCAGCGCCTCGTTGCCTTCGCTGCTGTTGA 712798 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 ||| || ||||| ||| ||| || ||||||| |||||||||||||| || ||||| Sbjct 712799 GGGTATTTTCTTCAGCGGTGCTTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCAT 712858 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| || || || | |||||| |||| ||||| || ||||| || ||| ||||| Sbjct 712859 GCCTGGTCTCACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACCGACTT 712918 Query 125570 TGCCATTCTACT 125581 |||| ||| || Sbjct 712919 TGCCTGTCTCCT 712930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058764627720