Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8 105 6e-18 seq6 89.7 5e-13 >seq8 Length=2135075 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | |||| ||||| || | |||||| ||||||| |||| |||||| Sbjct 385583 CACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCATCCTC 385524 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || ||| | ||||| | | || ||||| || |||||||| || ||||| | Sbjct 385523 CAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTG 385464 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTT 94975 || || ||| || | | | ||||| || ||| ||||| || | |||||||| Sbjct 385463 GATCTTGCTCTTCACATTGTCAATGGTGTC-GC-TGGACTCGACCTCCAGGGTGATGGTC 385406 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || |||||||||||||||| Sbjct 385405 TTGCCGGTGAGCGTCTTGACAAAGATCTGCATGC 385372 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||| ||| | ||||||||||| || | ||| || ||| | || || || ||||| Sbjct 384898 ACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCG--GAAAGGGTGCGACCATCCT 384841 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || || | ||||| | | || ||||| || ||||| || || ||||| | Sbjct 384840 CAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCT 384781 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| |||| ||||||| | ||| ||||| | | ||||| |||| |||||||| | Sbjct 384780 GAATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCAAGAGTGATGGTCT 384721 Query 94977 TTCCAGT 94983 | ||||| Sbjct 384720 TGCCAGT 384714 >seq6 Length=2850886 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| ||||| || | ||| || ||||||| ||| | |||||| ||||| || || Sbjct 2704330 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 2704271 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | || || || || ||||| || || ||||| | || || | |||| Sbjct 2704270 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 2704211 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | || || |||| ||||| || || || || || || Sbjct 2704210 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 2704151 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 2704150 TTCACGAAGATCTGCAT 2704134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290936628920