Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 212 8e-50 seq9 111 2e-19 >seq1 Length=5810324 Score = 212 bits (234), Expect = 8e-50 Identities = 802/1237 (65%), Gaps = 50/1237 (4%) Strand=Plus/Minus Query 62624 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCT 62683 ||| ||| ||| ||||| || || ||||||| ||| || || || | || || |||| Sbjct 2737204 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 2737146 Query 62684 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCCGCTAATCCTTGAACACCAATACCG 62741 | || || || | | |||| || || ||||| || | ||||||||||| | |||| Sbjct 2737145 ACTCGAAAGGC-AGTCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 2737087 Query 62742 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 62801 || |||| || | | | || | | || || || | |||||| | || | ||| Sbjct 2737086 ATGGGTCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 2737027 Query 62802 ATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 62861 ||||| || |||||||| | || | |||| | || || | ||| || || || Sbjct 2737026 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 2736967 Query 62862 AATCGCCCATCTATTACAAACATGTTCAAGGCA-ACAGATGCCAGA---------TTACA 62911 || | |||| || | | | | |||||| ||||| |||||| || || Sbjct 2736966 AAGCATGCATC-AT--CGTAGTTAATAAAGGCAGACAGA-GCCAGAGAAGCAAGGTTGCA 2736911 Query 62912 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62971 ||| || ||||| | || | | | ||| | || |||||||||||||| || | Sbjct 2736910 AACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCG 2736851 Query 62972 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63031 ||| || || | || | || || ||||| ||| || || ||||| || || ||||| Sbjct 2736850 GATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAA 2736791 Query 63032 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63090 |||| ||||||| ||| |||| | || | |||| | ||| | | || ||||||| | Sbjct 2736790 TGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAA-GCTTCTGAGCCTTGA 2736732 Query 63091 TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTC 63150 | | ||| | | || || ||||| |||||| || || || ||| Sbjct 2736731 TGGTGCGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTC 2736674 Query 63151 CCCAAA-CATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63208 ||| | || | ||| ||||| || |||| |||||||| | | |||||| || | Sbjct 2736673 ACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATT 2736614 Query 63209 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGT 63268 | | || || ||||| |||||||| |||||||||||||| | || ||||| | || Sbjct 2736613 CTTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGC 2736554 Query 63269 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63328 | | ||||| || || ||||| |||||||||||| | | | || || || Sbjct 2736553 ACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTG 2736494 Query 63329 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63388 ||| ||||| | ||| ||||| | | ||||| || || || || || || || | ||| Sbjct 2736493 CCAGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACGTA 2736434 Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 | || ||||| || | || | | ||| || | || || || || | || ||||| Sbjct 2736433 GCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGT 2736374 Query 63449 ACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCT 63506 |||| || || ||| | || ||||| | |||| || || || || || Sbjct 2736373 GCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCA 2736316 Query 63507 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCA 63566 ||||| || ||||| | ||||| || | |||||||||||| || || ||||| ||| Sbjct 2736315 GCCATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCA 2736256 Query 63567 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTA 63623 || |||||| | |||| ||| |||| | | ||| || || || ||||| Sbjct 2736255 TCTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTG 2736199 Query 63624 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 63683 || | || || || ||||| || || | || || | || ||||| ||||||||| Sbjct 2736198 AAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATA 2736139 Query 63684 GCTGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 | || |||| |||| |||| || || ||||| ||||| | ||||||| Sbjct 2736138 ACGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGC 2736085 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63797 || || | ||||| |||||| ||| | || | || ||| ||| |||| || || Sbjct 2736084 TGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTG 2736025 Query 63798 AAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63832 || ||||| || | ||| ||||| || || ||||| Sbjct 2736024 AAGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2735990 >seq9 Length=1624432 Score = 111 bits (122), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| |||||||| || | | || || |||||||| || ||||| Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||||||||| || ||||| || ||||||||||| | || ||||| Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATG 33479 || || || || ||||| ||||||| || | || || | | | ||||| Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||||| ||||||| ||||||||||| Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946834018520