Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq8 111 1e-19 seq2 93.3 4e-14 >seq6 Length=2850886 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| |||||| Sbjct 2704360 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 2704301 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||| |||||||| || Sbjct 2704300 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 2704241 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 2704240 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 2704181 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || ||||| || || || || ||||| |||||||| Sbjct 2704180 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 2704134 >seq8 Length=2135075 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || |||| || | || |||||||| || |||||||| |||||| Sbjct 385144 CCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 385085 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | ||||| || ||||| || Sbjct 385084 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 385025 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| | | || ||||| | || | ||| || | ||||| | Sbjct 385024 ATGCCCTCCTTATC-CTGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAAC 384966 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | ||| || ||||| || ||||| Sbjct 384965 CTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 384918 >seq2 Length=4113143 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| ||| ||| Sbjct 379809 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGA 379868 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||| |||||||| || || || || ||||| ||| ||| ||||| | | Sbjct 379869 TCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 379928 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| |||| ||| | ||| || || |||| || || || Sbjct 379929 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAAC-- 379986 Query 131225 AAATCTGC 131232 ||| |||| Sbjct 379987 AAAGCTGC 379994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012522692480