Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 221 2e-52 seq9 98.7 1e-15 >seq1 Length=5810324 Score = 221 bits (244), Expect = 2e-52 Identities = 803/1236 (65%), Gaps = 48/1236 (4%) Strand=Plus/Minus Query 62479 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCT 62538 ||| ||| ||| ||||| || || ||||||| ||| || || || | || || |||| Sbjct 2737204 TAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTGAGCTCACGAGCCTC-AGGCG 2737146 Query 62539 A-TCAAATGGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCG 62596 | || || || | | |||| || || ||||| || | ||||||||||| | |||| Sbjct 2737145 ACTCGAAAGGC-AGTCGCAGAGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCG 2737087 Query 62597 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 62656 || |||| || | | | || | | || || || | |||||| | || | ||| Sbjct 2737086 ATGGGTCGGTGACGCATGTTGCTGTTACGTGCCTCAGGGACAGGATAGTGGTTTACATCG 2737027 Query 62657 ATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA 62716 ||||| || |||||||| | || | |||| | || || | ||| || || || Sbjct 2737026 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 2736967 Query 62717 AATCGCCCATC----TATTACAAACATGTT--CAATGCAACAGATGCCAGATTACAAACG 62770 || | |||| || | | | | | || || | ||| || || || ||||| Sbjct 2736966 AAGCATGCATCATCGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAACA 2736907 Query 62771 GCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATG 62830 || ||||| | || | | | ||| | || |||||||||||||| || | ||| Sbjct 2736906 GCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGATT 2736847 Query 62831 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGA 62890 || || | || | || || ||||| ||| || || ||||| || || ||||||||| Sbjct 2736846 GTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCATGAATGGA 2736787 Query 62891 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTAT 62949 ||||||| ||| |||| | || | |||| | ||| | | || ||||||| || | Sbjct 2736786 TTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAA-GCTTCTGAGCCTTGATGGT 2736728 Query 62950 AGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCC 63006 ||| | ||| || || ||||| |||||| || || || ||| Sbjct 2736727 GCGCTTG---CCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAATTC--CTCA 2736673 Query 63007 CCAAA-CATT-GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63064 ||| | || | | | || ||||| || |||| |||||||| | | |||||| || | Sbjct 2736672 CCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCACTCGCCATTC 2736613 Query 63065 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63124 | | || || ||||| |||||||| |||||||||||||| | || ||||| | || Sbjct 2736612 TTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAGATCACGGGCA 2736553 Query 63125 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63184 | | ||||| || || ||||| |||||||||||| | | | || || ||| Sbjct 2736552 CGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAACTCAAAGACGTCTGAGTGC 2736493 Query 63185 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTAT 63244 || ||||| | ||| ||||| | | ||||| || || || || || || || | ||| Sbjct 2736492 CAGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCACCTTGGTCAACGTAG 2736433 Query 63245 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 63304 | || ||||| || | || | | ||| || | || |||||||| || || ||||| Sbjct 2736432 CGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAGGTGCCGTTGGTG 2736373 Query 63305 CCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTG 63362 || | || || ||| | || ||||| | |||| || || || || || | Sbjct 2736372 CCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTG--AGGCCAATGCCACCAG 2736315 Query 63363 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 63422 |||| || ||||| | ||||| || | ||| ||||||||||| || || || |||| Sbjct 2736314 CCATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCAATGCTGTCAT 2736255 Query 63423 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA---CGACTAGTTCCCGCATTAA 63479 | |||||| | |||| ||| |||| | | ||| || || || ||||| | Sbjct 2736254 CTTTCATGTCGACAAGAA---AGCAAGACGATAGCTGAGCTTGAGGGGTACCAGCATTGA 2736198 Query 63480 ATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539 | | || || || |||||||| || | || || | || ||||| ||||||||| Sbjct 2736197 AGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTCTCAATAA 2736138 Query 63540 CTGAGTCTATAT------CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63593 | || |||| |||| |||| || || ||||| ||||| | |||||||| Sbjct 2736137 CGCGCTCAATATTGTCACCCCA--GATG----CCGACAGCGACGCGCATAATCATGTGCT 2736084 Query 63594 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63653 | || | ||||| |||||| ||| | || | || ||| ||| |||| || || | Sbjct 2736083 GTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGATCGCTCCAGGGTCTTGA 2736024 Query 63654 AACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63687 | ||||| || | ||| ||||| || || ||||| Sbjct 2736023 AGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 2735990 >seq9 Length=1624432 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||| ||| |||||||| || | | || | |||||||| || ||||| Sbjct 712925 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAG 712866 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| ||||||||||| || ||||| || ||||| || || | || ||||| Sbjct 712865 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAA 712806 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG---CTGTCATG 32836 ||| || || || || || ||||||| || | || || | | | ||||| Sbjct 712805 AATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTGTCAGC 712746 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 |||||||| ||||||| ||||||||||| Sbjct 712745 AATCCACTTGAGAGCCCAGTCGGCCTTCTT 712716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631627741200