Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8 129 5e-25 seq6 91.5 1e-13 seq2 82.4 7e-11 >seq8 Length=2135075 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || ||||||| | || || ||||||||| Sbjct 384918 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACCATCACTCTTGAGGTTGAGTCGTCT 384977 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| |||| | ||| || || || || ||||| || || || Sbjct 384978 GACACTATCGACAACGTCAAGTCAAAGATTCA-GGATAAGGAGGGCATTCCCCCGGATCA 385036 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || ||||| || | || |||| ||||||| || |||| ||||| Sbjct 385037 ACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTGAGCGACTACAA 385096 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || |||| || Sbjct 385097 CATCCAGAAGGAGTCTACTCTTCACCTAGTCCT 385129 >seq6 Length=2850886 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || ||||| | ||||| | || |||||||| || Sbjct 2704134 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 2704193 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || |||||| Sbjct 2704194 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAA 2704253 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| ||||| || |||| ||||| Sbjct 2704254 CAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTACAAC 2704313 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 2704314 ATCCAGAAGGAGTCTACCCTCCA 2704336 >seq2 Length=4113143 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 ||||| ||||| || || || || ||||||| |||| || ||||| || ||||| ||| Sbjct 379989 TTTGTTAAGACGTTAACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 379930 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| || || ||||| || ||||||||||| Sbjct 379929 GA--CAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCC 379872 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || || || ||||| || | || |||| ||||| | ||| ||||| || || | Sbjct 379871 TGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGA 379812 Query 25186 A 25186 | Sbjct 379811 A 379811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327751784305