Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8 129 5e-25 seq1 118 9e-22 seq2 116 3e-21 seq6 111 1e-19 >seq8 Length=2135075 Score = 129 bits (142), Expect = 5e-25 Identities = 141/187 (75%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 22233 TAAAACTTTA---ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGA 22289 || ||||||| || || || || |||||||||| || ||| || |||| ||| | || Sbjct 384701 TATAACTTTAGTCACTGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGACACCATCGA 384760 Query 22290 CGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTAT 22349 | | |||| ||| ||||| ||||||||||| ||||| || |||||||| || || || Sbjct 384761 CAACGTCAAGTCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAGCGCCTGAT 384820 Query 22350 ATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 || || ||||| ||| | |||||| |||||| | ||||| |||||||| || || || Sbjct 384821 CTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTTCCGACTACAACATCCAGAAGGA 384880 Query 22410 ATCCACC 22416 ||| ||| Sbjct 384881 ATCTACC 384887 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | ||||| || || |||| || || || || ||| | Sbjct 385374 ATGCAGATCTTTGTCAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCCAGC 385433 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || ||||||||||||||||| || |||||| Sbjct 385434 GACACCATTGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCGGATCAA 385493 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||||| |||||| ||||| | ||| || ||| Sbjct 385494 CAGCGCCTGATCTTCGCCGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTATAAC 385553 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 385554 ATCCAGAAGGA 385564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || ||||||| || || || | | Sbjct 385146 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACAATCACTCTCGAGGTTGAGTCATCT 385205 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| || |||||||||||||| || |||||| Sbjct 385206 GACACCATCGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATTCCCCCGGATCAA 385265 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| |||||| | ||| |||||| Sbjct 385266 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGAGCGACTACAAC 385325 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 385326 ATCCAGAAGGA 385336 >seq1 Length=5810324 Score = 118 bits (130), Expect = 9e-22 Identities = 270/399 (68%), Gaps = 13/399 (3%) Strand=Plus/Minus Query 129985 GGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACC 130044 |||||||| | ||||| |||| | |||||| || ||||| || | ||| || | | Sbjct 2736639 GGACACATGAGTGTCCACTCGCCATTCTTTTCGACACGCTTCATGAAGAGATCCGGAATC 2736580 Query 130045 CACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCAC--CCATGTTACGTTTC- 130101 || || ||| || | ||| || || | | |||| | ||||| | | || | Sbjct 2736579 CAAAGAGCGAGGAAAAGATCACGGGCA---CGAACCTCCTCTTTGCCATGGTTC-TTACG 2736524 Query 130102 -AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC 130160 || || ||||| || | | ||| | |||||| ||||||| ||||| || | ||||| Sbjct 2736523 GAGATCGAGGAACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCGCC 2736464 Query 130161 CTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACAT 130217 || || ||| ||||||||||||| ||| | | |||||| |||| || | ||| Sbjct 2736463 AGGACGCTTATTGCCACCTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCAT 2736404 Query 130218 TGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAAC 130277 | | | | || |||| |||||||| |||| ||||| || |||| |||||||| Sbjct 2736403 AGGCACAAGGCCATTGGAGGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAAT 2736344 Query 130278 GTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAA-TCGCGTA 130336 ||||| | || || ||||| || | | || || |||| |||||| || | | Sbjct 2736343 TCGGTGAACATTGAGGCCAATGCCACCAGCCATCTTGGAGATCATAGCGCAAGTCTTG-A 2736285 Query 130337 GCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGT 130375 |||| ||||| |||||| | || ||||| ||||| |||| Sbjct 2736284 GCGTGTCATAGATGCCATCAATGCTGTCATCTTTCATGT 2736246 >seq2 Length=4113143 Score = 116 bits (128), Expect = 3e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 |||||||| || ||||| || || || |||| || || || || || | || ||| | Sbjct 379989 TTTGTTAAGACGTTAACTGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 379930 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || || ||||||||||| ||||| || || ||||| || || Sbjct 379929 GACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 379870 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||||||| ||||||| |||||||| || || Sbjct 379869 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 379811 >seq6 Length=2850886 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || ||||| || |||| ||||| ||||| | Sbjct 2704131 AAGATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 2704190 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| ||||| || || Sbjct 2704191 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 2704250 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| || || || || || ||||| ||| | |||||| ||||||| | ||| ||| Sbjct 2704251 CAACAGCGCCTGATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGAGCGACTAC 2704310 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || || ||| Sbjct 2704311 AACATCCAGAAGGAGTCTACC 2704331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727759574555