Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9 143 5e-29 seq2 105 1e-17 >seq9 Length=1624432 Score = 143 bits (158), Expect = 5e-29 Identities = 303/447 (68%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| |||| ||||| |||| Sbjct 713212 TGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATGTTCTCC 713153 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||| ||||| |||| |||||| ||| | |||||| || |||| || | Sbjct 713152 ATGAAGTCGAAAGGGTTGGTGGAGTTGTACACCTTCTCGTTGCCAAGAGCGACGAGGAGG 713093 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || || ||||| | ||||| ||| || | ||||||||| | | | Sbjct 713092 CGGTCAGCGACGAACTCAATGTACTGCTGCATGAGGGTGGCGTTCATGCCGAGGAGGGCA 713033 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 || |||| || ||| || ||| |||||||||| | || ||||| | ||| || Sbjct 713032 CAGGGAAGAGCATCAGTGAGGAACTCCTTTTCGTAAACCACGGCCTCAGTGATAATATCC 712973 Query 251782 T---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAA 251837 | | ||||| | | | | | ||||| ||| | |||| ||||| | |||| Sbjct 712972 TCAATGACCTGCTTGCTGGGGC----GGTTCTTCAGGTGGGAGTGAAGGAGACAGGCAAA 712917 Query 251838 CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCAT 251897 | ||| |||||||| || ||| ||| | ||||||||| | | || |||||||| Sbjct 712916 GTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACCAGGCAT 712857 Query 251898 CACCCCACGGTTCCTGAGCCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCT 251956 | ||||| ||| ||||||||||||| | || |||| | || ||| | | ||||| Sbjct 712856 GAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCA-CCGCTGAAGAAAATACCCT 712798 Query 251957 CGACACACACCCATGCAACAAGGCGCT 251983 | ||| | | ||||| ||||||| Sbjct 712797 CAACAGCAGCGAAGGCAACGAGGCGCT 712771 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| |||||| ||||| || |||| ||||| ||||| ||| Sbjct 970170 GGTGAGGATCTTTGCAACTGCACTTTCTCCCTCGCCTACGGTGCCAAGATCCTGCTCAAC 970229 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| ||||||||||| | || || ||||| ||| ||||| || | Sbjct 970230 CAGACTCACCTTCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGCCCCAACGGTTCC 970289 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||| ||||| |||| ||| | || || || || || ||| Sbjct 970290 GGCAAGTCCACTCTCATGCGTGCCATCAACAACGAGCAGGTCGAGGGCTTCCCCAA-GCA 970348 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 |||||| | ||| || | || |||||||| |||| ||| Sbjct 970349 GAGTGAGGTCAAGACCGTTTTCGTTGAGCACGATCTCGATTCC 970391 Score = 87.8 bits (96), Expect = 4e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || ||||||||||| || || ||| ||||| |||| | | || Sbjct 971572 CTCACTCCCGTATGCGCGGTCTTTCCGGTGGTCAGCGTGTCAAGACTGTCCTTGCTGCTT 971631 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | ||||| ||||||| |||||||||||||| ||||| || ||||| Sbjct 971632 GCTCT-TGGCAGCGTCCTCATCTGATCGTCCTCGACGAGCCTACTAACTACCTCGACCGT 971690 Query 280821 GAGAGCCTGGGCGCTCT 280837 || |||||| || || Sbjct 971691 GACTCCCTGGGTGCCCT 971707 >seq2 Length=4113143 Score = 105 bits (116), Expect = 1e-17 Identities = 436/676 (64%), Gaps = 19/676 (3%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| |||||||||||||| || || |||| ||||| || | | Sbjct 3203147 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAGCTCGCTCTGGCTCGTGCCATGCTCCAG 3203088 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||||||| || || || || || || || ||||| | ||| | ||||| | || Sbjct 3203087 AAGGCCGATGTTCTTCTTCTCGACGAACCTACTAACCATCTCGACGTCGCCAACATTGCG 3203028 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||| | | |||||| | | | | | | | | | ||||| ||||||||| Sbjct 3203027 TGGTTGGAAAACTACCTCAAGACGCACACCGAGATCACCAGCTTGATTGTTTCTCACGAC 3202968 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 ||||| ||||| ||| ||| | | |||| ||||| |||| ||| ||||||| Sbjct 3202967 TCTGGATTCCTGGATAACGTCACGACCGACATCTACCACTACGAGCCCAATAAGAAGCTC 3202908 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAG--CGCCCTGAGGCGGCCGCCT 279993 || ||| |||||||| |||| ||||| ||| | ||||||||||| | Sbjct 3202907 GCCTGCTACAAGGGCAACCTCGCTGCCTTCGT--CAAGGTCCGCCCTGAGGCCAAGAGTT 3202850 Query 279994 ACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 |||| ||| | | | | ||| | ||||| || || | || | Sbjct 3202849 ACTACACTCTGTCTGCTTCAAATGTGCAGTTCAAGTTCCCGCCTCCTGGCATCCTCTCTG 3202790 Query 280054 GCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATCC 280111 | ||| || | || || ||||| | | || |||||||| | || || Sbjct 3202789 GTGTCAAGTCCCAAACACGTGCTATCATCCGCATGACCAA--CGTCTCCTACACATACCC 3202732 Query 280112 CAATGGCCCCAA--CATC--TTCAGCAGTGTCAACTCGCAGGTTT--CTATGAACTCACG 280165 ||||| ||||| | || | ||| || || || ||| | |||| ||| || Sbjct 3202731 CAATGCTCCCAAGCCGTCGCTCCAGGAG-GTATCCTGCCAGCTCAGCCTATC--CTCCCG 3202675 Query 280166 GATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGG 280225 | | ||||||| ||||| ||||| || ||||| ||||||||||| | || ||||| Sbjct 3202674 AGTCGCCATCATTGGCCCCAACGGTGCTGGAAAGTCCACCCTAATCAAGCTTCTCACTGG 3202615 Query 280226 CGAGACCCAGGCCACTGAGGGGTCCGTTTG-GAAGCATCCCAACATGCGGATGGCTTACG 280284 |||||| |||| | ||| | ||| |||||| || ||| |||| || | ||| Sbjct 3202614 CGAGACTATTCCCAC-CACTGGTAAGGTTGAGAAGCACCCTAACCTGCGTATCGGCTACA 3202556 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 || ||||| ||| | | ||| |||||| || || || | ||| || ||||| ||| Sbjct 3202555 TCAAGCAGCATGCTCTTGAGCACGTCGAGATGCATCTCGAGAAGACGCCCAACCAGTACC 3202496 Query 280345 TTCAGTGGCGCTATGC 280360 | |||||||| || || Sbjct 3202495 TCCAGTGGCGTTACGC 3202480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836181049527