Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6 167 4e-36 seq8 147 4e-30 seq2 125 1e-23 seq9 114 2e-20 >seq6 Length=2850886 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || ||| Sbjct 2704360 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 2704301 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||| || ||| Sbjct 2704300 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 2704241 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 2704240 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 2704181 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||| ||||| |||||||| Sbjct 2704180 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCAT 2704134 >seq8 Length=2135075 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || ||| || ||||||||||| ||| Sbjct 385600 CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTC 385541 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| |||||||| || || | ||||| || || ||| Sbjct 385540 AGAGTGCGACCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGA 385481 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || |||||||| || ||||| ||| || || |||||||| ||| || || || Sbjct 385480 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTGTCAATGGTGTC-GCTGGACTCGAC 385422 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || ||||| |||||||| || |||||||| Sbjct 385421 CTCCAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 385374 Score = 145 bits (160), Expect = 1e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || || || || || |||||||| || ||||| Sbjct 384916 CCGCCACGGAGGCGGAGAACCAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAA 384857 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | ||||| || || ||| Sbjct 384856 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 384797 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||||| ||||||| ||||||||||| | ||||| || Sbjct 384796 ATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAGGATTCGACC 384737 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||| || || |||| Sbjct 384736 TCAAGAGTGATGGTCTTGCCAGTGA 384712 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || || ||||| || |||||||| || ||| Sbjct 385144 CCACCGCGGAGACGAAGGACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 385085 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | ||||| || || ||| Sbjct 385084 AGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGA 385025 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || |||||||||| ||||||| ||||| ||||| | || || || Sbjct 385024 ATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACC 384965 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || | ||||||||||| || ||||| Sbjct 384964 TCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 384918 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || ||| || |||||||| || ||| Sbjct 385372 CCACCACGAAGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTC 385313 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | ||||| || || ||| Sbjct 385312 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGGGGA 385253 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| ||| ||| ||||||||||| | ||| || || Sbjct 385252 ATACCCTCCTTATCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACC 385193 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || || ||||||||||| || ||||| Sbjct 385192 TCGAGAGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 385146 >seq2 Length=4113143 Score = 125 bits (138), Expect = 1e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 379811 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 379870 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | |||||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 379871 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 379930 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || || || | ||||| || || Sbjct 379931 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACAAA 379989 Score = 84.2 bits (92), Expect = 4e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||| || |||||||||| |||||||||||| ||| | || || || |||| | || | Sbjct 3202479 GGCGTAACGCCACTGGAGGTACTGGTTGGGCGTCTTCTCGAGATGCATCTCGACGTGCTC 3202538 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | ||||||||| | ||| | || |||| ||| || |||||| || || Sbjct 3202539 AAGAGCATGCTGCTTGATGTAGCCGATACGCAGGTTAGGGTGCTTCTCAACCTTACCAGT 3202598 Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 || || | |||||| ||||| | |||||| || || | ||| || ||||| ||||| Sbjct 3202599 GGTGGGAATAGTCTCGCCAGTGAGAAGCTTGATTAGGGTGGACTTTCCAGCACCGTTGGG 3202658 Query 225154 GCCAATCACGCCAATCCGGGATGA 225177 |||||| | | | | ||||| || Sbjct 3202659 GCCAATGATGGCGACTCGGGAGGA 3202682 >seq9 Length=1624432 Score = 114 bits (126), Expect = 2e-20 Identities = 313/473 (66%), Gaps = 10/473 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || | || || |||||||||||||| |||||| | Sbjct 713228 CATGACACCAGCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 713169 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| |||||||||||| || ||||| || | || ||| || || Sbjct 713168 CAGGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTGGAGTTGTACACCTTCTCGTTGCC 713109 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || | ||||||||| |||||||| |||||||| ||| ||| | ||| Sbjct 713108 AAGAGCGACGAGGAGGCGGTCAGCGACGAACTCAATGTACTGCTGCATGAGGGTGGCGTT 713049 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | | | ||||| | || || | ||| |||||||||| | || || Sbjct 713048 CATGCCGAGGAGGGCACAGGGAAGAGCATCAGTGAGGAACTCCTTTTCGTAAACCACGGC 712989 Query 10175 TTCCTCG--ACGATGCTC-TTTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || | | || ||| | ||| | | ||| | ||||| || | || | Sbjct 712988 CTCAGTGATAATATCCTCAATGACCTGCTTGCTGGGGC----GGTTCTTCAGGTGGGAGT 712933 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 ||||| |||| | ||| || ||||| || || ||| | ||||||||| | Sbjct 712932 GAAGGAGACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGA 712873 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 || ||||| |||||||| || || || |||||||| |||| ||| | ||| Sbjct 712872 AAGTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGC 712813 Query 10351 AGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402 ||| | || |||||| || ||| | |||| |||||||||| ||||||| Sbjct 712812 TGAAGAAAATACCCTCAACAGCA-GCGAAGGCAACGAGGCGCTGACCGAAGGA 712761 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 225817 GGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCC 225876 |||||||||||| | ||| | || || ||||| | || || |||||| | || Sbjct 970343 GGGGAAGCCCTCGACCTGCTCGTTGTTGATGGCACGCATGAGAGTGGACTTGCCGGAACC 970284 Query 225877 GTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAG 225936 |||||| ||| || ||||| | | || ||||||| ||| | || ||| || Sbjct 970283 GTTGGGGCCGCAAAGACCGTAGCGCTGGCCACGCTTGAGACGAAGGTGAGTCTGGTTGAG 970224 Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||||||| |||| ||||| |||||||| ||| | ||| || |||||||||||||| Sbjct 970223 CAGGATCTTGGCACCGTAGGCGAGGGAGAAAGTGCAGTTGCAAAGATCCTCACCCTCCTC 970164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621858546840