Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 156 5e-33 seq3 86.0 7e-12 >seq1 Length=5810324 Score = 156 bits (172), Expect = 5e-33 Identities = 751/1180 (64%), Gaps = 18/1180 (2%) Strand=Plus/Minus Query 113759 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 113818 || ||||| ||||| |||| ||| ||| | ||| || ||||| | ||| || ||| Sbjct 2737641 ATCTCCCAAACAGTCTTGTACAGGGCCTTGACATCGTCAGGGATGTTGGGGATGTTCTGG 2737582 Query 113819 ATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTT 113878 |||||||| | | | ||| | | |||||| | | |||||| ||||||| | Sbjct 2737581 ATGGAGCCGTTCTCGGCAATGATGCGGTTTTTCATAGCATCTGACCAAAGACCAAGTTCA 2737522 Query 113879 TTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTC 113936 ||||||| || || ||| | ||||||| ||||| || || || || | Sbjct 2737521 ACAAGATCCTTCAGCAGCCATGGGT--TGACAACCTGGAACTCGCCAGCAAGCACACGGC 2737464 Query 113937 TCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGG 113996 | | |||||||| | || || |||||||||||||| ||||| || | || || | | Sbjct 2737463 GCTGGTAGATATTCGAAGTATAGGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGTGATG 2737404 Query 113997 TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGC 114056 | ||| ||||||||||| || | || || ||||| || | || | ||| | || Sbjct 2737403 TACTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGAATGCCATGCTCCTTGATTT 2737344 Query 114057 GTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACT 114116 | ||||||||| ||||||||| | | | | || | | ||||||||| | | Sbjct 2737343 GCTCCTTGAGGCTGTCCCAGTCCCACAGGTCGCTGGGCTTGACGTTCCACATATCGTATT 2737284 Query 114117 GGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCG 114176 | || ||||||| |||||| || || |||| || | | ||||||||||||||||| | Sbjct 2737283 GCAGAATACCTTCGGAGGCAGGGGAACCCTTGAACGACGAGTATGGGCCCTCAACCTTGG 2737224 Query 114177 CCAATTC-GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 | | || || | || | || ||||| || || |||||||| || | || Sbjct 2737223 CGATCTCAACAGAT-GCAGTTAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTTG 2737165 Query 114236 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCGCGAG 114294 | | ||||| || || || | |||| ||| | || || | || ||||| Sbjct 2737164 AGCTCACGAGCCTCAGGCGACTCGAAAGGCAGTC-GCAGAGCAAGGAAGGCGTCAGCGAG 2737106 Query 114295 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC--- 114351 ||||| ||||||| || || || || || | ||| || || || || ||| Sbjct 2737105 GCCTTGAACACCGACACCGATGGGTCGGTGACGCATGTTGCTGTTACGTGC---CTCAGG 2737049 Query 114352 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 114411 || ||||| || |||||||| | | || ||||| ||||| | || | Sbjct 2737048 GACAGGATAGTGGTTTACATCGATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAAC 2736989 Query 114412 TTCATGAAGCTTTTCGTAATCAAAAC-TGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 ||| || ||||| | | | || || | ||| | || | || | | | || || | Sbjct 2736988 TTCGTGCAGCTTCTTGAAGTCGAAGCATGC-ATCATCGTAGTTAATAAAGGCAGACAGAG 2736930 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 | | || || || || || |||| ||| || | ||| ||||| || || || | Sbjct 2736929 CCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAG 2736870 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 | || | || || || || || || | |||||| || || ||| ||| || | Sbjct 2736869 TGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAG 2736810 Query 114591 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 114650 | |||||||| |||||| |||| | || ||||| || || | || || || | | || Sbjct 2736809 CGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACC 2736750 Query 114651 AGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 114709 | | | || | | || | | ||| ||| | |||||| ||||||||| ||| Sbjct 2736749 AAAGCTTCTGAGCCTTG-ATGGTGCGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTAC 2736691 Query 114710 AGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 114769 | || ||||| || ||||| | || | || || || || || || || | | Sbjct 2736690 AATGCCTCAAATTCCTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATG 2736631 Query 114770 AGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCT 114829 || | ||| | ||| || || ||||||||||||||||| || || ||||| ||||| Sbjct 2736630 AGTGTCCACTCGCCATTCTTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCG 2736571 Query 114830 GAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 114889 ||| ||||| || ||| | || || | || || || ||| | || | || Sbjct 2736570 AGGAAAAGATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGAAC 2736511 Query 114890 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929 || | || || | |||||| ||||| ||||| | |||| Sbjct 2736510 TCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGA 2736471 >seq3 Length=3685789 Score = 86.0 bits (94), Expect = 7e-12 Identities = 184/270 (68%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 10967 GCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 11026 || ||||| || |||||||| | ||| ||||| || | ||| | | |||||| | Sbjct 1652194 GCATCAATCTCGTCGATGAAGATGATGCACGGGGCGTTCTTGCGGCCTTCGGCAAAGAGA 1652135 Query 11027 TCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CGGCGGAAC 11084 || || || | || || ||||| || ||||| ||||| || | | | || || Sbjct 1652134 TCGCGCACACGGGAGGGTCCCACACCGACGAACATCTCCACGAACTCAGATCCGCTGACG 1652075 Query 11085 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | || |||||| ||| |||||||| || |||| ||||| || || || || | Sbjct 1652074 CT--GAAGAAGGGAACGCCTGATTCACCGGCAGTGGCCTTTGCGAGCAGTGTTTTACCGG 1652017 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA--CTTC-CAAAGT 11201 | |||||| || ||||||| |||||||||||||| | || ||| |||| | || | Sbjct 1652016 TGCCAGGTGGGCCAGCGAGAATAGCACCACGTGGGATTTTTGCGCCAAGCTTCTCGAACT 1651957 Query 11202 AGCGCTCAGGTTGTTTAAGGAAGTCCACGA 11231 |||||| || || ||||||| ||||| Sbjct 1651956 ---TCTCAGGCTGCTTCAGGAAGTTCACGA 1651930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353249054760