Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq8 100 3e-16 >seq8 Length=2135075 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | || |||||||| || || ||||| || |||||| || | Sbjct 385361 ACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCC 385302 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || ||||||||||||||||| || || ||||| || || | || | | |||||| Sbjct 385301 ATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTT 385242 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| | || | | ||| | | | ||||| || || || |||| |||| Sbjct 385241 ATCC-TGAATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTGA 385183 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| || ||||||||||| Sbjct 385182 TTGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 385146 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || |||||| || | || || |||||||| |||||||| Sbjct 385109 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 385050 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 || || ||||| || || | || | || |||||| ||| ||| | |||| |||| || Sbjct 385049 GATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCC-TGAATCTTTGACTTGA-CG 384992 Query 42136 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | ||||| ||| || || || | |||||||| ||||| || | ||||| Sbjct 384991 TTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTG 384932 Query 42195 ACAAAGATTTGCAT 42208 || ||||||||||| Sbjct 384931 ACGAAGATTTGCAT 384918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212480862480