Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1 232 7e-56 >seq1 Length=5810324 Score = 232 bits (256), Expect = 7e-56 Identities = 602/915 (66%), Gaps = 2/915 (0%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| || ||||| |||||| | | ||| Sbjct 2736005 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGATCATACCTGCTCAAGCTCAACGGC 2736064 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| || || || || | ||||||||||| |||| || || || Sbjct 2736065 AAGATTGTTGAGCGTCCACAGCACATGATTATGCGCGTCGCTGTCGGCATCTGGGGTGAC 2736124 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 | || | ||| | | | | || |||| | |||| | || ||| Sbjct 2736125 AATATTGAGCGCGTTATTGAGACCTACAACCTCATGTCGAGCAAGTTTTTCACTCACGCC 2736184 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTG-TTTCCTGAT 93953 | || || || ||||| || || ||||| | ||| | || || || |||| || Sbjct 2736185 TCACCCACGCTCTTCAATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTC 2736244 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | || | ||| ||| || || | |||| |||||| || || | || Sbjct 2736245 GAC-ATGAAAGATGACAGCATTGATGGCATCTATGACACGCTCAAGACTTGCGCTATGAT 2736303 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || || || ||| ||| ||| | || || | || || || Sbjct 2736304 CTCCAAGATGGCTGGTGGCATTGGCCTCAATGTTCACCGAATTCGGGCTACTGGCTCTTA 2736363 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 ||| ||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 2736364 CATTGCCGGCACCAACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAA 2736423 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||| ||||| | | | || | ||||| | || || Sbjct 2736424 CACTGCCCGCTACGTTGACCAAGGTGGCAATAAGCGTCCTGGCGCCTTCGCCATTTACCT 2736483 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 || ||||||||| | ||||| | ||| |||| || || |||||||| ||||| || Sbjct 2736484 TGAACCCTGGCACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGA 2736543 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | ||| | || || ||| |||||| ||| | || || || || ||||| || Sbjct 2736544 GGAGGTTCGTGCCCGTGATCTTTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCG 2736603 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||||| || || || |||| || | ||||| ||||| || || || || |||| Sbjct 2736604 TGTCGAAAAGAATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGA 2736663 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 | | ||| | ||||| | ||||| | ||||| | ||||||||| || Sbjct 2736664 CTGCTATGGTGAGGAATTTGAGGCATTGTACGAGAAGTACGAGAGGGAGGGCAAGGGCAA 2736723 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || | ||| |||||| ||| | |||| | || | |||| ||||| || Sbjct 2736724 GCGCACCATCAAGGCTCAGAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGG 2736783 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || || | ||| | | ||||||| || |||| ||| ||||||| || |||| || Sbjct 2736784 TAATCCATTCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGG 2736843 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || || ||||| ||||| |||||||| || |||| |||||| | Sbjct 2736844 TACAATCCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGT 2736903 Query 94614 TGCTGTGTGTAACCT 94628 |||||| || ||||| Sbjct 2736904 TGCTGTTTGCAACCT 2736918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722909350120