Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 seq6 102 8e-17 seq8 96.9 3e-15 >seq1 Length=5810324 Score = 138 bits (152), Expect = 1e-27 Identities = 707/1099 (64%), Gaps = 59/1099 (5%) Strand=Plus/Minus Query 153383 CTCGTACGGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGA 153441 |||| | |||| ||||| |||| |||||||| || || || || | |||||| |||| Sbjct 2737144 CTCGAAAGGCAGTCGCAG-AGCAAGGAAGGCGTCAGCGAGGCCTTGAACACCGACACCGA 2737086 Query 153442 TGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCG 153500 ||||||| || | ||||||| | || ||| | | |||||||| || |||| Sbjct 2737085 TGGGTCGGTGACGCATGTTGCTGTTACGTGC-CTCAGGGACAGGATAGTGGTTTACATCG 2737027 Query 153501 ATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCA 153560 ||||| |||||||| ||||| ||||| |||| || | | | || |||| ||| || Sbjct 2737026 ATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAACTTCGTGCAGCTTCTTGAAGTCG 2736967 Query 153561 TAGGTCATT--TCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGA 153618 || ||| || ||| | | | | || || | ||| || || || || | Sbjct 2736966 AAG--CATGCATCATCGTAGTTAATAAAGGCAGACAGAGCCAGAGAAGCAAGGTTGCAAA 2736909 Query 153619 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTG---CTGC--A 153673 | || ||| || | | |||| | |||||| | ||| |||||| |||| | Sbjct 2736908 CAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCAGTGCAAAGGTTGGAGCTGCGGA 2736849 Query 153674 TTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCAT 153733 || || || | || | ||| ||||| || || ||||| ||||| ||| ||||||| Sbjct 2736848 TTGTA-----CCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAAGCGTCCTTGTAGAGCAT 2736794 Query 153734 GTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAA---CCTATGCAGGTCCTGCGC 153790 | | || || ||||| || | || | ||| | || | || | ||| || Sbjct 2736793 GAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTACCAAAGC---TTCTGAGC 2736737 Query 153791 TCGCACCCGCTGCCGATAGCG---GCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAA 153847 | | ||| | | || |||||| |||||||| |||||||| | |||||| Sbjct 2736736 CTTGAT--GGTGC-GCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTACAATGCCTCAAA 2736680 Query 153848 CTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACAT 153907 || || || ||||||||||| ||||| || |||| || |||||||| || | |||| Sbjct 2736679 TTCCTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACATGAGTGTCCAC-- 2736622 Query 153908 ATCGTCGGCGTT---GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAG 153964 ||| | || ||| || |||||| |||||||| | ||| || ||| | || Sbjct 2736621 -TCGCCATTCTTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAGCGAGGAAAAG 2736563 Query 153965 GTCGCGCGCCTTGCAATCCTCCGC--GCCCATGTTGCGTTTC--AGATTGAGCACGCTAT 154020 || || || | | ||||| | ||||| | | || | |||| ||| | | Sbjct 2736562 ATCACGGGC---ACGAACCTCCTCTTTGCCATGGTTC-TTACGGAGATCGAGGAACTCAA 2736507 Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGC 154077 ||| ||| | |||||||||||||| ||| | ||| | ||| || |||| || || | Sbjct 2736506 AGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTATTGCCAC 2736447 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 | || || |||| ||| | | ||||||||||| || | ||| || | ||||| | | Sbjct 2736446 CTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGG 2736387 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197 |||||||||||| || | ||| || || | | | || || || | || Sbjct 2736386 AGGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGC 2736327 Query 154198 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCC 154255 ||||||| || ||| | ||| || || ||||| |||| ||||| |||||||| Sbjct 2736326 CAATGCCACCAGCCAT-CTTGGAGATCATAGCGCAAGTC-TTGAGCGTGTCATAGATGCC 2736269 Query 154256 GTCGATGCTATCGTCGCGGACGCCGAGCAAGAAA-CACGAACACATTTGCGGAATGCGCG 154314 || ||||| || || | | ||| ||||||| || || | | || | | | Sbjct 2736268 ATCAATGCTGTCATCTTTCATGTCGA-CAAGAAAGCAAGACGATAGCTGAGCTTGAGGGG 2736210 Query 154315 TTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCG-- 154372 | || || ||||| ||||| ||||| || || | || |||| |||| | Sbjct 2736209 TACCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTT---GCTCGACATGAGGT 2736153 Query 154373 -GTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGA 154431 ||| || || || || || |||| || || ||||||| ||||||||||| | Sbjct 2736152 TGTAGGTCTCAATAACGCGCTCAATATTGTCACCCCAGATGCCGACAGCGACGCGCATAA 2736093 Query 154432 GCATGTGCTGCGGACGTTC 154450 ||||||||| ||||| || Sbjct 2736092 TCATGTGCTGTGGACGCTC 2736074 >seq6 Length=2850886 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || ||||| || || || || | Sbjct 2704327 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCG 2704268 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || |||||||||||||| || || || || ||||| ||| || || | Sbjct 2704267 AAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 2704208 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | || ||||| || || || || Sbjct 2704207 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTC 2704148 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 2704147 ACGAAGATCTGCAT 2704134 >seq8 Length=2135075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||| || ||||| || || ||||| | | Sbjct 385337 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCGAA 385278 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || || |||||||| ||||| || ||||| || || || ||| | || | || | | Sbjct 385277 AATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTATC-CTGAATCTTGCTCTTCACGT 385219 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||| ||||||| || | || || || |||||||| || Sbjct 385218 TG-TCGATGGTGTCAGATGACTCAACCTCGAGAGTGATTGTCTTGCCGGTCAGAGTCTTG 385160 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 385159 ACGAAGATTTGCAT 385146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| ||| || ||||| || || || || | Sbjct 385111 GACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCG 385052 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || |||||||| ||||| || || || || || || ||| | |||| || | Sbjct 385051 AAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATC-CTGAATCTTTGACTTGAC 384993 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||| ||||| | || | || || || |||| ||| | Sbjct 384992 GTTG-TCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCT 384934 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 384933 TGACGAAGATTTGCAT 384918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262108445840