Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq3 82.4 9e-11 >seq1 Length=5810324 Score = 136 bits (150), Expect = 5e-27 Identities = 749/1182 (63%), Gaps = 22/1182 (2%) Strand=Plus/Minus Query 115720 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 115779 || ||||| ||||| |||| ||| ||| | ||| || ||||| | ||| || ||| Sbjct 2737641 ATCTCCCAAACAGTCTTGTACAGGGCCTTGACATCGTCAGGGATGTTGGGGATGTTCTGG 2737582 Query 115780 ATAGAGCCACCTGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATC 115836 || ||||| || | | |||| | | |||||| | | |||||| ||||||| Sbjct 2737581 ATGGAGCCGTT---CTCGGCAATGATGCGGTTTTTCATAGCATCTGACCAAAGACCAAGT 2737525 Query 115837 TTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGT 115896 | ||||||| || || |||||||| ||||| || || || || Sbjct 2737524 TCAACAAGATCCTTCAGCAGCCATGGGTTGACAACCTGGAACTCGCCAGCAAGCACACGG 2737465 Query 115897 CTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT 115956 | | | ||||| || | || || |||||||||||||| ||||| || | || || | | Sbjct 2737464 CGCTGGTAGATATTCGAAGTATAGGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGTGAT 2737405 Query 115957 GTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG 116016 || ||| ||||||||||| || | || || |||||||| | || | || | || Sbjct 2737404 GTACTGGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGAATGCCATGCTCCTTGATT 2737345 Query 116017 CGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 | ||||||||| ||||||||| | | | | || | | ||||||||| | Sbjct 2737344 TGCTCCTTGAGGCTGTCCCAGTCCCACAGGTCGCTGGGCTTGACGTTCCACATATCGTAT 2737285 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 || || ||||||| ||| || || || |||| || | | |||||||||||||||| Sbjct 2737284 TGCAGAATACCTTCGGAGGCAGGGGAACCCTTGAACGACGAGTATGGGCCCTCAACCTTG 2737225 Query 116137 GCCAATTC-GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 || | || || | || | || ||||| || || |||||||| || | || Sbjct 2737224 GCGATCTCAACAGAT-GCAGTTAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGCTTGTT 2737166 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACA-AAATAAATACATCCGCGA 116254 | | ||||| || || || | || | ||| | || || | || |||| Sbjct 2737165 GAGCTCACGAGCCTCAGGCGACTCGAAAGGCAGTC-GCAGAGCAAGGAAGGCGTCAGCGA 2737107 Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-- 116312 | ||||| ||||||| || || || || || | ||| || || || || ||| Sbjct 2737106 GGCCTTGAACACCGACACCGATGGGTCGGTGACGCATGTTGCTGTTACGTGC---CTCAG 2737050 Query 116313 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 || ||||| || |||||||| | | || ||||| ||||| | || | Sbjct 2737049 GGACAGGATAGTGGTTTACATCGATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAA 2736990 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAAC-TGCGAGTCTCTTCATTGACATACTTAGGAAGG 116430 ||| || ||||| | | | || || | ||| | || | || | | | || || Sbjct 2736989 CTTCGTGCAGCTTCTTGAAGTCGAAGCATGC-ATCATCGTAGTTAATAAAGGCAGACAGA 2736931 Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || | || || || || || |||| ||| || | ||| ||||| || || || Sbjct 2736930 GCCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCA 2736871 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || || | || || || || || || | |||||| || || ||| ||| || Sbjct 2736870 GTGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAA 2736811 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||||||||| |||| | || ||||| || || | || || || | | | Sbjct 2736810 GCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTAC 2736751 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | || | | || | | ||| ||| | |||||| ||||||||| ||| Sbjct 2736750 CAAAGCTTCTGAGCCTTG-ATGGTGCGCTTGCCCTTGCCCTCCCTCTCGTACTTCTCGTA 2736692 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 | |||||||| || ||| ||| ||| || | || || || || || ||||| | Sbjct 2736691 CAATGCCTCAAATTCCTCA-CCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACACA 2736633 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 ||| | ||| | ||| || || || |||||||||||||| || || ||||| || | Sbjct 2736632 TGAGTGTCCACTCGCCATTCTTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGAG 2736573 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | ||| ||||| || ||| | || || | || || || ||| | || | | Sbjct 2736572 CGAGGAAAAGATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGGA 2736513 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | || | || || | |||||| ||||| ||||| | |||| Sbjct 2736512 ACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGA 2736471 >seq3 Length=3685789 Score = 82.4 bits (90), Expect = 9e-11 Identities = 183/270 (68%), Gaps = 10/270 (4%) Strand=Plus/Minus Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 || ||||| ||||| ||||| | ||| ||||| || | ||| | | |||||| | Sbjct 1652194 GCATCAATCTCGTCGATGAAGATGATGCACGGGGCGTTCTTGCGGCCTTCGGCAAAGAGA 1652135 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGGAAC 12999 || ||||| | || || ||||| || ||||||||||| || | | | || || Sbjct 1652134 TCGCGCACACGGGAGGGTCCCACACCGACGAACATCTCCACGAACTCAGATCCGCTGACG 1652075 Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 | || |||||| ||| |||||||| || |||| ||||| || || || || | Sbjct 1652074 CT--GAAGAAGGGAACGCCTGATTCACCGGCAGTGGCCTTTGCGAGCAGTGTTTTACCGG 1652017 Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA--CTTC-CAAAGT 13116 | || ||| || ||||||| |||||||||||||| | || ||| |||| | || | Sbjct 1652016 TGCCAGGTGGGCCAGCGAGAATAGCACCACGTGGGATTTTTGCGCCAAGCTTCTCGAACT 1651957 Query 13117 AGCGCTCGGGTTGTTTAAGAAAGTCCACGA 13146 ||| || || || || |||| ||||| Sbjct 1651956 ---TCTCAGGCTGCTTCAGGAAGTTCACGA 1651930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506839564520