Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 138 2e-27 seq1 96.9 6e-15 >seq9 Length=1624432 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 ||||| || ||||||||| ||| || ||||| || |||||||| | ||||||||| | Sbjct 712930 AGGAGACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAA 712871 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 |||| || ||||||| |||||| |||||||| || |||| || ||||||||||| Sbjct 712870 GTGAGACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTG 712811 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG 160096 || || || ||||| || || || || || ||||| | || ||| || || | ||| || Sbjct 712810 AAGAAAATACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGACCGAAGGATGAGTTCTTG 712751 Query 160097 TCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGG 160143 ||| ||||| | ||||| || |||||| ||||| ||||| || Sbjct 712750 TCAGCAATCCACTTGAGAGCCCAGTCGGCCTTC-TTGCGAATGCAGGG 712704 >seq1 Length=5810324 Score = 96.9 bits (106), Expect = 6e-15 Identities = 318/485 (66%), Gaps = 12/485 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAAT-GGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTACATGCC 203898 || || ||||||||||| || | |||||| |||||| | | ||| ||||||||||| Sbjct 2737842 TCAACAGTGAACTGAATCGGAG----CGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCC 2737787 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || || || ||| || | |||||| | | |||| || | |||| Sbjct 2737786 AGTCTTGAGTCCAAGCTTCCATCCTGTGAAATGCATGCTGGTGATCTTGCCCATGCTGGG 2737727 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGC 204018 ||| |||||| ||||| || ||||| ||||||||||||| | || ||||| || Sbjct 2737726 GTCCTTCATGTGGATGTTGAGCGACTGAGACTGGTCGATGAAAGCACCACGGTCTGCCGC 2737667 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| | | ||| ||| ||||||||||| || |||||| ||| | | || | Sbjct 2737666 CATCTGCACAATTTGGCGCTGAGAAATCTCCCAAACAGTCTTGTACAGGGCCTTGACATC 2737607 Query 204079 TTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 | ||| | | | | || || ||| |||||||| ||||| || | | | || Sbjct 2737606 GTCAGGGATGT-TGGGGATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTTTTCA 2737548 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 | | || ||| | | |||| | | | || ||| || ||| ||||||| | | Sbjct 2737547 TAGCATCTGACCA-AAGACCAAGTTCAACAAGATCCTTCAGCAGCCATGGGTTGACAACC 2737489 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || || || || | ||||| | || | | | || || | || || || | Sbjct 2737488 TGGAACTCGCCAGCAAGCACACGGCGCTGGTAGATATTCGAAGTATAGGGCTCAAAGCAC 2737429 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 ||||||||||| | |||||| | || ||||| ||||||||||| || || ||||| | Sbjct 2737428 TCGTTGTTGCCAAGAATCTGTGATGTACTGGCAGTGGGCATGGGGGCAAGCAGCAGACTG 2737369 Query 204317 TTGCG 204321 ||||| Sbjct 2737368 TTGCG 2737364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154732846320