Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 208 9e-49 seq9 145 9e-30 seq3 114 2e-20 >seq1 Length=5810324 Score = 208 bits (230), Expect = 9e-49 Identities = 898/1395 (64%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| | ||||| ||||| |||| ||| || || ||||||| ||| Sbjct 2736080 CCACAGCACATGATTATGCGCGTCGCTGTCGGCATCTGGGGTGACAATATTGAGCGCGTT 2736139 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||| | | |||| ||||| |||| || |||||| Sbjct 2736140 ATTGAGACCTACAACCTCATGTCGAGCAAGTTTTTCACTCACGCCTCACCCACGCTCTTC 2736199 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || |||||||| || | | || | || ||| || ||| | | | || || || Sbjct 2736200 AATGCTGGTACCCCTCAAGCTCAGCTATCGTCTTGCTTTCTTGTCGACATGAAAGATGAC 2736259 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCTG 111849 || ||||||| || | ||| |||| || | ||| | | ||||| ||| ||||| Sbjct 2736260 AGCATTGATGGCATCTATGACACGCTCAA-GACT-TGCGCTATGATCTCCAAGATGGCTG 2736317 Query 111850 GTGGTATCGGGATGCACATCCAT-GATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACA 111908 |||| || || | | | || || || | || | ||| ||| || || Sbjct 2736318 GTGGCATTGGCCTCAATGTTCACCGAATTCGG-GCTACTGGCTCTTACATTGCCGGCACC 2736376 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || |||| || | || ||||| || || || ||| ||| || ||||| Sbjct 2736377 AACGGCACCTCCAATGGCCTTGTGCCTATGCTCCGGGTCTTCAACAACACTGCCCGCTAC 2736436 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || |||||| ||| ||||| || | |||| | || ||||| || ||| Sbjct 2736437 GTTGACCAAGGTGGCAATAAGCGTCCT---GGCGCCTTCGCCATTTACCTTGAACCCTGG 2736493 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||| | || || | |||||||| || | ||| ||||| || | ||||||| || Sbjct 2736494 CACTCAGACGTCTTTGAGTTCCTCGATCTCCGTAAGAACCATGGCAAAGAGGAGGTTCGT 2736553 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| ||||| ||| |||||| |||||||| ||||||||||||||| | || || || Sbjct 2736554 GCCCGTGATCTTTTCCTCGCTCTTTGGATTCCGGATCTCTTCATGAAGCGTGTCGAAAAG 2736613 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGG 112201 | |||| | ||| | ||| | ||||| | || || || || |||| ||| | || Sbjct 2736614 AATGGCGAGTGGACACTCATGTGTCCTAATGAGTGCCCTGGCCTTGCCGACTGCTAT-GG 2736672 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC--GGGCGACTGCGACG 112259 |||||| ||||| || | ||| |||||||| || | | | | |||| | || || Sbjct 2736673 TGAGGAATTTGAGGCATTGTACGAGAAGTACGA-GAGGGAGGGCAAGGGCAAGCGC-ACC 2736730 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | | || | || | | ||| | | || || || | || || |||||||||| || Sbjct 2736731 AT-CAAGGCTCAGAAGCTTTGGTACTCGATCCTTGAGGCACAGACTGAGACTGGTAATCC 2736789 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || ||||| ||||| ||||| || |||| ||||| || || ||||| | ||| || Sbjct 2736790 ATTCATGCTCTACAAGGACGCTTGCAACCGTAAGAGCAACCAGAAGAACCTTGGTACAAT 2736849 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | || |||||||| || || || ||| | || | | | | || ||| ||||| Sbjct 2736850 CCGCAGCTCCAACCTTTGCACTGAGATCATCGAGTATTCTGCTCCTGACGAGGTTGCTGT 2736909 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 || ||||| || || | ||||| | | | | | | | || | | || | Sbjct 2736910 TTGCAACCTTGCTTCTCTGGCTCTGTCTGCCTTTATTAACTACGATGATGCATGC-TTCG 2736968 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | || || ||||||||||| || ||| || || |||| |||| | Sbjct 2736969 ACTTCAAGAAGCTGCACGAAGTTACCCAAGTTGTGGTTCGCAATCTCAACAAGATTATCG 2737028 Query 112558 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 || ||| || || || |||| || ||||| || ||| | ||||| || | Sbjct 2737029 ATGTAAACCACTATCCTGTCCCTGAG---GCACGTAACAGCAACATGCGTCACCGACCCA 2737085 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGAT 112673 | ||| ||||||| ||||| ||||| || | ||| || || || || | | || || Sbjct 2737086 TCGGTGTCGGTGTTCAAGGCCTCGCTGACGCCTTCCTTGCTCTG-CGACTGCCTTTCGAG 2737144 Query 112674 TCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTT 112733 || || || || |||| || || |||||||| || || ||||| ||| | Sbjct 2737145 TCGCCTGAGGCTCGTGAGCTCAACAAGCAGATCTTTGAGACTATTTACCACGCTGCTTTA 2737204 Query 112734 GAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 || | ||| | || ||||||| || ||||| | || ||||||| || Sbjct 2737205 ACTGCATCTGTTGAGATCGCCAAGGTTGAGGGCCCATACTCGTCGTTCAAGGGTTCCCCT 2737264 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGA 112852 || || |||| | || |||| ||||||| |||| || | || ||| | | || Sbjct 2737265 GCCTCCGAAGGTATTCTGCAATACGATATGT-GGAACGTCAAGCCCAGCGACCTGTGGGA 2737323 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||||||| |||||||| | ||||||||| | || |||| |||||||| || | || Sbjct 2737324 CTGGGACAGCCTCAAGGAGCAAATCAAGGAGCATGGCATTCGCAACAGTCTGCTGCTTGC 2737383 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || ||| || |||| || | || || || || |||||||| ||||| Sbjct 2737384 CCCCATGCCCACTGCCAGTACATCACAGATTCTTGGCAACAACGAGTGCTTTGAGCCCTA 2737443 Query 112973 CACGACGAACATCTA 112987 || |||| ||||| Sbjct 2737444 TACTTCGAATATCTA 2737458 >seq9 Length=1624432 Score = 145 bits (160), Expect = 9e-30 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 102167 ||||||| || |||| ||||| || || |||||| | |||||| ||| | |||| | Sbjct 712699 CAGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACT 712758 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | | |||| | | |||| ||| | || || || |||||||||||| |||||| ||| Sbjct 712759 CAT-CCTTCGGTCAGCGCCTCGTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGT 712817 Query 102228 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 | ||| | || | |||||||||||||| || |||||||| |||||| |||||| Sbjct 712818 GCTTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCC 712877 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||||||||||||||| ||||| || ||| || ||||| Sbjct 712878 AACGAGCTTATCTCTCGTGATGAGGGTCTTCACACCGACTTTGC 712921 >seq3 Length=3685789 Score = 114 bits (126), Expect = 2e-20 Identities = 311/464 (67%), Gaps = 24/464 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || || ||||| | ||| || | ||| | ||||||| | ||||| || | Sbjct 1652380 CGATCAAATCGGCCAGGGCGCATGAGAGCCTTATCCAAGATATCAGCACGATTGGTGCCA 1652321 Query 15945 GCGATGACAACAATACCTGTTTC--GTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 || | ||| || | |||||| | | | || || |||||||| || | || ||| | Sbjct 1652320 GCCAGGACGACGA--CCTGTTCACGGGTGTTGAAGCCGTCCATCTCCGTGAGAATCTGAT 1652263 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGT--TG-CTTTC 16059 | | || || ||||| || || || || | | || || | | || || || | Sbjct 1652262 TCAGCGTGGCCTCGCGTTCGTCGTTTCCTC-CAAAGCCCCGGC-CGGAGTCTTGTCTGGC 1652205 Query 16060 CC-----ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 || | ||||||||||| || ||||||| |||||| || || | ||| | | Sbjct 1652204 CCGGCCAATAGCATCAATCTCGTCGATGAAGATGATGCACGGGGCGTTCTTGCGGCCTTC 1652145 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG- 16173 |||||||||| || ||||| || |||||||| || ||||||||||| || | | Sbjct 1652144 GGCAAAGAGATCGCGCACACGGGAGGGTCCCACACCGACGAACATCTCCACGAACTCAGA 1652085 Query 16174 -CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | || || | || |||||| || |||||||| ||| |||| ||||| || Sbjct 1652084 TCCGCTGACGCT--GAAGAAGGGAACGCCTGATTCACCGGCAGTGGCCTTTGCGAGCAGT 1652027 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--C 16290 || ||||| || || || || ||||| | ||||| ||||| || || |||||| | Sbjct 1652026 GTTTTACCGGTGCCAGGTGGGCCAGCGAGAATAGCACCACGTGGGATTTTTGCGCCAAGC 1651967 Query 16291 TTC-CAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||| | || | ||||||| ||||| || || | ||| | ||| Sbjct 1651966 TTCTCGAACT---TCTCAGGCTGCTTCAGGAAGTTCACGAACTC 1651926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742035313840