Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 215 6e-51 seq3 127 2e-24 seq9 91.5 2e-13 >seq1 Length=5810324 Score = 215 bits (238), Expect = 6e-51 Identities = 1058/1663 (64%), Gaps = 43/1663 (3%) Strand=Plus/Minus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 |||| || ||| || || ||||| || || ||||| ||| ||||||| | | |||| Sbjct 2737812 GCCTGCGTGCGCAGGTAGTACATGCCAGTCTTGAGTCCAAGCTTCCATCCTGTGAAATGC 2737753 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || | || ||| | | || || ||| | ||| | |||||||||||| Sbjct 2737752 ATGCTGGTGATCTTGCCCATGCTGGGGTCCTTCATGTGGATGTTGAGCGACTGAGACTGG 2737693 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG-GCT----AATTT 109573 |||||||| |||||| || |||||||| | | || ||| | ||| ||| | Sbjct 2737692 TCGATGAAAGCACCACGGTCTGCCGCCATCTGCA-----CAATTTGGCGCTGAGAAATCT 2737638 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| ||||||||||||| ||||| ||| || || |||| |||||| || || | Sbjct 2737637 CCCAAACAGTCTTGTACAGGGCCTTGACATCGTCAGGGATGTTGGGGATGTTCTGGATGG 2737578 Query 109634 AGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGA 109693 |||| | | ||| | | ||||| | | ||||| ||||| | | | Sbjct 2737577 AGCCGTTCTCGGCAATGATGCGGTTTTTCATAGCATCTGACCAAAGACCAAGTTCAACAA 2737518 Query 109694 GATCGTCAACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 |||| | | || ||| |||||| || || || |||||||| || || | Sbjct 2737517 GATCCTTCAGCAGCCATGG--GTTGACAACCTGGAACTCGCCAGCAAGCACACGGCGCTG 2737460 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 |||||| || | || ||||| || || ||||| |||||||| || || |||| || Sbjct 2737459 GTAGATATTCGAAGTATAGGGCTCAAAGCACTCGTTGTTGCCAAGAATCTGTGATGTACT 2737400 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || ||||||||||| || | || |||||||| || | || | | ||| | |||| Sbjct 2737399 GGCAGTGGGCATGGGGGCAAGCAGCAGACTGTTGCGAATGCCATGCTCCTTGATTTGCTC 2737340 Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGG 109931 | |||||| || | | | || | || | | ||||||||| Sbjct 2737339 CTTGAGGCTGTCCCAGTCCCACAGGTCGCTG------GGCTTGACGTTCCACATATCGTA 2737286 Query 109932 TTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTC 109991 ||| || | ||| || | ||||| ||||||||||| | ||| | |||||||||| Sbjct 2737285 TTGCAGAATACCTTCGGAGGCAGGGGAACCCTTGAACGACGAGTATGGGCCCTCAACCTT 2737226 Query 109992 GGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATT 110051 ||| | ||| || || || || || || || ||||||||||| || || || Sbjct 2737225 GGCGATCTCAACAGATGCAGTTAAAGCAGCGTGGTAAATAGTCTCAAAGATCTGC---TT 2737169 Query 110052 CATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACACATCCG 110107 |||| |||| ||| | ||||| || || | || || || || | || | Sbjct 2737168 GTTGAGCTCACGAGCCTCAGGCGACTCGAAAGGCAGTCG-CAGAGCAAGGAAGGCGTCAG 2737110 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | || || |||||||||| ||| ||||| || || |||||| | || || Sbjct 2737109 CGAGGCCTTGAACACCGACACCGATGGGTCGGTGACGCATGTTGCTGTTACGTGCCTCAG 2737050 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 || || || ||| ||||| | | |||||||| |||| | || | Sbjct 2737049 GGACAGGATAGTGGTTTACATCGATAATCTTGTTGAGATTGCGAACCACAACTTGGGTAA 2736990 Query 110228 TTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGGGGAGA 110286 ||| || || || | | | ||||| | | | || | || || | | | | ||| Sbjct 2736989 CTTCGTGCAGCTTCTTGAAGTCGAA-GCATGCATCATCGTAGTTAATAAAGGCAGACAGA 2736931 Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 || | ||| ||||| ||||| |||| | |||||| | | || || | || || Sbjct 2736930 GCCAGAGAAGCAAGGTTGCAAACAGCAACCTCGTCAGGAGCAGAATACTCGATGATCTCA 2736871 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | |||||| || || ||| | ||||||||| || || |||||| Sbjct 2736870 GTGCAAAGGTTGGAGCTGCGGATTGTACCAAGGTTCTTCTGGTTGCTCTTACGGTTGCAA 2736811 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 || ||||| ||||||||| |||| ||||||| || ||||||| || || || | | | Sbjct 2736810 GCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGATCGAGTAC 2736751 Query 110467 CATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGA--GACCTTCCTCCTCGTACTTGGTG 110523 || | | || | | | | | |||| | || | ||| |||| |||||||| | Sbjct 2736750 CAAAGCTTCTGAGCCTTGAT--GGTGCGCTTGCCCTTGCCCTCCCTC-TCGTACTTCTCG 2736694 Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 ||||| |||||||||||| || || || | ||| || || | ||||| Sbjct 2736693 TACAATGCCTCAAATTCCTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAGGACAC 2736634 Query 110584 AAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATC 110643 | ||| | ||| | ||| || || || | ||||||||| || || |||||||| | Sbjct 2736633 ATGAGTGTCCACTCGCCATTCTTTTCGACACGCTTCATGAAGAGATCCGGAATCCAAAGA 2736574 Query 110644 GCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 || |||||| |||||| |||| |||| || | || ||||| || || || | Sbjct 2736573 GCGAGGAAAAGATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGATCGAGG 2736514 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGA 110763 || || | || || |||||||| ||||| || || | |||| || || ||| | Sbjct 2736513 AACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCGCCAGGACGCTTA 2736454 Query 110764 C--CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 || ||| ||| ||| ||||| || ||| |||||||||| ||||||||| | || Sbjct 2736453 TTGCCACCTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGG 2736394 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 |||| ||| || || || || ||| || | | || ||||| ||| | | Sbjct 2736393 CCATTGGAGGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACA 2736334 Query 110881 TGCATACCAATACCACCCGCCCACTTACTAAT--TTGTGCACACTCTGTGAGTGTACCAT 110938 | | ||||| ||||| ||| ||| || | | ||| | ||| |||| || ||| Sbjct 2736333 TTGAGGCCAATGCCACCAGCCATCTTGGAGATCATAGCGCA-AGTCT-TGAGCGTGTCAT 2736276 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | || |||||||| || | || || | | ||||||||||| || | ||||| Sbjct 2736275 AGATGCCATCAATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTT 2736216 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 |||| || || ||||||||||| || |||| || ||| |||| Sbjct 2736215 GAGGGGTACCAGCATTGAAGAGCGTGGGTGAGGCGTGAGTGAA 2736173 >seq3 Length=3685789 Score = 127 bits (140), Expect = 2e-24 Identities = 317/468 (68%), Gaps = 30/468 (6%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||| || || || ||||| | ||||| | ||| | ||||| |||| || || | Sbjct 1652380 CGATCAAATCGGCCAGGGCGCATGAGAGCCTTATCCAAGATATCAGCACGATTGGTGCCA 1652321 Query 11563 GCAATGACTACAATGCCAGTCTCAT---TGTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || | || || ||| ||| ||| |||||||| || ||||||| ||| Sbjct 1652320 GCCAGGACGACGA--CCTGT-TCACGGGTGTTGAAGCCGTCCATCTCCGTGAGAATCTGA 1652264 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTA--- 11676 || | ||| || || || ||||| || | | || |||| | ||| | Sbjct 1652263 TTCAGCGTGGCCTCGCGTTCGTCGTTTCCTC-CAAAGCCCCGGCCGGAGTCTTGTCTGGC 1652205 Query 11677 ----CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 || | ||| |||||||| |||||||| | ||| ||||| ||| || |||| Sbjct 1652204 CCGGCCAATAGCATCAATCTCGTCGATGAAGATGATGCACGGGGCGTTCTTGCG-GCCT- 1652147 Query 11733 TTCG---AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTT 11789 ||| || || || || ||||| | ||| ||||| ||||||||||| ||||| | Sbjct 1652146 -TCGGCAAAGAGATCGCGCACACGGGAGGGTCCCACACCGACGAACATCTCCACGAACTC 1652088 Query 11790 TG--CGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | || | || ||||| ||||||||| || ||||| || |||| ||||| Sbjct 1652087 AGATCCGCTG-ACGCTGAA-GAAGGGAACGCCTGATTCACCGGCAGTGGCCTTTGCGAGC 1652030 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || || ||||| || ||||||| |||||||||| || ||||| ||||| || || ||| Sbjct 1652029 AGTGTTTTACCGGTGCCAGGTGGGCCAGCGAGAATAGCACCACGTGGGATTTTTGCGCCA 1651970 Query 11908 --CTTC-CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||| | || | |||||||| ||| ||||||| ||| | |||| Sbjct 1651969 AGCTTCTCGAACT---TCTCAGGCTGCTTCAGGAAGTTCACGAACTCC 1651925 >seq9 Length=1624432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||| ||||| || ||| || || Sbjct 712922 GGCAAAGTCGGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTGAGACC 712863 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || | ||||| ||||| ||||||| | ||| || ||||| || Sbjct 712862 AGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAAGCACCGCTGAAGAAAAT 712803 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGT---CGA 119670 ||||| ||| ||||| || | || |||| | | |||| ||| ||||| | | Sbjct 712802 ACCCTCAACAGCAGCGAAGGCAACGAGGCGCTGA-CCGAAGGATGAGTTCTTGTCAGCAA 712744 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTT 119695 ||||||||||||||||| |||||| Sbjct 712743 TCCACTTGAGAGCCCAGTCGGCCTT 712719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975653976600