Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8 152 1e-31 seq2 111 3e-19 >seq8 Length=2135075 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| ||||| || || || ||||| ||| ||||| | ||||| || Sbjct 385126 ACTAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCA 385067 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || ||||| || || |||||||| || || || ||| Sbjct 385066 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGA 385007 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| || || ||||| || || || ||||| || | ||||| Sbjct 385006 ATCTTTGACTTGACGTTGTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTG 384947 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | |||||| Sbjct 384946 CCGGTCAAAGTCTTGACGAAGATTTGCAT 384918 Score = 116 bits (128), Expect = 8e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||| || || || ||||| ||| ||||| | ||||| || ||||| Sbjct 385349 GTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCAAGCTG 385290 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||| || || || ||||| || || ||||| || || || || ||||| || Sbjct 385289 CTTACCAGCGAAAATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTATCCTGAATCTT 385230 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || |||||||| || || || || || || | ||||| || || Sbjct 385229 GCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTGATTGTCTTGCCGGT 385170 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| || ||||| | |||||| Sbjct 385169 CAGAGTCTTGACGAAGATTTGCAT 385146 Score = 87.8 bits (96), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||| || || || || || ||| ||||| | ||||| || | ||| Sbjct 385577 GTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGACCATCCTCCAACTG 385518 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || ||||| || || ||||| || || ||||| || || || Sbjct 385517 CTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCCTTGTCCTGGATCTT 385458 Query 195057 TTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| || || |||||||||| | | || || || || ||||| | ||||| || Sbjct 385457 GCTCTTCACATTGTCAATGGTGTCGCTGGAC--TCGACCTCCAGGGTGATGGTCTTGCCG 385400 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || | ||||| Sbjct 385399 GTGAGCGTCTTGACAAAGATCTGCAT 385374 >seq2 Length=4113143 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| || |||||||| || |||||||| Sbjct 379811 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATC 379870 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || |||||||| || |||||||| || ||||| || || || |||||| || || Sbjct 379871 AGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 379930 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || || || || || || || Sbjct 379931 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCAGTTAACGTCTTAACAAA 379989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480931884049