Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=5810324 Score = 107 bits (118), Expect = 2e-18 Identities = 380/589 (65%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||| || ||||||||||| ||||| || || | ||||| || |||| | |||| ||| Sbjct 2736817 GTTGCAAGCGTCCTTGTAGAGCATGAATGGATTACCAGTCTCAGTCTGTGCCTCAAGGAT 2736758 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCT-TTATTATCATGTTCGTATT 48111 || | ||||| || |||||| || || || || || || ||||| | Sbjct 2736757 CGAGTACCAAAGCTTCTGAGCCTTGATGGT-GCGCTTGCCCTTGCCCTCCCTCTCGTACT 2736699 Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171 | || || ||||||||| || ||||| | | | ||||| || ||||||| Sbjct 2736698 TCTCGTACAATGCCTCAAATTCCTCACCATAGCAGTCGGCAAGGCCAGGGCACTCATTAG 2736639 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 ||||||| | || ||| || ||| |||| || | |||| || | ||| || |||| Sbjct 2736638 GACACATGAGTGTCCACTCGCCATTCTTTTCGACACGCTTCATGAAGAGATCCGGAATCC 2736579 Query 48232 AAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291 ||||||| | || | ||| | | | | || || |||||| ||| | || | Sbjct 2736578 AAAGAGCGAGGAAAAGATCACGGGCACGAACCTCCTCTTTGCCATGGTTCTTACGGAGAT 2736519 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 | || || || | | || | ||||| ||||| | || || || | | || || | Sbjct 2736518 CGAGGAACTCAAAGACGTCTGAGTGCCAGGGTTCAAGGTAAATGGCGAAGGCGCCAGGAC 2736459 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 | ||||| || ||||| || | || | |||||| ||||| | || | | ||| || | Sbjct 2736458 GCTTATTGCCACCTTGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCA 2736399 Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATT 48469 ||| ||||| || | || ||||| || | ||| ||| ||| |||| | || | Sbjct 2736398 CAAGGCCATTGGAGGTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGT 2736339 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 |||| | || || ||||| ||||| || || || | ||| || || || || Sbjct 2736338 GAACATTG--AGGCCAATGCCACCAGCCATCTTGGAGATCATAGCGCAAGTCTTGAGCGT 2736281 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 ||||| || || || || || |||||| |||| | | ||||| ||| Sbjct 2736280 GTCATAGATGCCATCAATGCTGTCATCTTTCATGTCGACAAGAAAGCAA 2736232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108469761080