Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 >seq8 Length=2135075 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||||| || || || || || || ||| | ||| Sbjct 385591 AGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTATAGTCGCTCAGAGTGCGA 385532 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| ||||| || ||||| ||||||||||||| ||||| |||||| Sbjct 385531 CCATCCTCCAACTGCTTGCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGAATACCCTCC 385472 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || | ||| ||||||| || Sbjct 385471 TTGTCCTGGATCTTGCTCTTCACATTGTCAATGGTGTCGCTGGACTCGACCTCCAGGGTG 385412 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 385411 ATGGTCTTGCCGGTGAGCGTCTTGACAAAGATCTGCAT 385374 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || ||| | ||| | || || | |||||| || || || Sbjct 385109 CTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 385050 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||||||||||| ||||| ||||||||| || ||||||| || || Sbjct 385049 GATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTATCCTGAATCTTTGACTTGACGTT 384990 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || |||| ||| ||||| | || || || || || |||||||| || || Sbjct 384989 GTCGATAGTGTCAGACGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCAAAGTCTTGAC 384930 Query 48755 AAAAATCTGCAT 48766 || || ||||| Sbjct 384929 GAAGATTTGCAT 384918 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||||| || || || ||||| || ||| | || Sbjct 385363 AGACGGAGCACCAAGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGG 385304 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| || || ||||| ||||||||||||| ||||| |||||| Sbjct 385303 CCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGATCCGGGGGAATACCCTCC 385244 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || || | | | || || | ||| ||||| | || Sbjct 385243 TTATCCTGAATCTTGCTCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCGAGAGTG 385184 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| || || || || ||||| Sbjct 385183 ATTGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 385146 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || || | ||| | || || | |||||| || || || Sbjct 384880 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAG 384821 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| ||||||||||||| ||||| |||||||||||| ||||||| Sbjct 384820 ATCAGGCGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTT 384773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937381794181