Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 136 1e-26 seq9 109 2e-18 seq5 91.5 4e-13 >seq6 Length=2850886 Score = 136 bits (150), Expect = 1e-26 Identities = 208/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| |||||||||||||| || |||||| | ||| || ||||| Sbjct 931092 TCTTCAAGAGCCTTGACCAAACGACGCTGAATGTAGCCAGTTTCGGCTGTCTTGACAGCG 931151 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 |||||||| ||||| |||||||| |||| || ||||| || | || || ||| || Sbjct 931152 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAAAAGAATTCAGTAGG-CGTCAG 931210 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | ||||| |||||||||| ||||| || || || || | ||| |||||| Sbjct 931211 GCCACGCAGGTAGGAGTTCTCAACGAAGCCACGAGCTTCAGGAGAGTAATCGTCCTTGGT 931270 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| || || || | || || | ||| | || || |||||||| ||||| |||| Sbjct 931271 GAAGTGAGGAAGAGTGCGGTACTTGAAACCGAACGGAATGCGCTTTCCTTCAACAATCTG 931330 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||| || | | | ||||||| || ||||| | | | |||||||| || Sbjct 931331 CTGACCGACAAGGGCAGTCATCTGAGAGATATTGATAGAAGAACCCTTGGAACC 931384 Score = 100 bits (110), Expect = 8e-16 Identities = 107/141 (76%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 || |||||| | | ||| || |||||| |||| ||||| |||||||| ||||||||| Sbjct 930314 CAAAATTTCCTTGAGACGCGGCACACCAAGGGTAACGTT---CTTGGACGAAACACCAGC 930370 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 |||||||||||| ||||| || | || || | ||||||||||| || || |||| Sbjct 930371 AAAGTGGAAAGTGTTCAGTGTCATCTGTGTGGCGGGCTCACCAATGGACTGGGCAGCAAG 930430 Query 301932 CATACCAACCATTTCTCCTGG 301952 | ||||||||||| || || Sbjct 930431 GACGCCAACCATTTCGCCGGG 930451 >seq9 Length=1624432 Score = 109 bits (120), Expect = 2e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||| || ||| ||||| | ||||||||| | || ||||| |||||| | Sbjct 712702 TTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATTGCTGACAAGAACTCAT 712761 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 || | | || |||||||| || |||| || ||||| ||||| ||||| ||||| | Sbjct 712762 CCTTCGGTCAGCGCCTCGTTGCCTTCGCTGCTGTTGAGGGTATTTTCTTCAGCGGTGCTT 712821 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || ||||| || |||||||| | | ||||| || ||| || |||| Sbjct 712822 TCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACTTTCTCCAACG 712881 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTC 133671 | ||||| || | || |||| ||||||||||| |||||| | | |||||||| Sbjct 712882 AGCTTATCTCTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTCTCCTTCACTC 712936 >seq5 Length=3145821 Score = 91.5 bits (100), Expect = 4e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||||||||||| | | | || ||||| | ||| |||| || Sbjct 2358550 ATCAGTCCACAAATCTCGCACACATGGACTCGGAAGGCGTCAGAAACCTCAAATAGGCGC 2358491 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| |||| | || ||||| | |||||| ||||| ||||||||||| |||||| Sbjct 2358490 TCCTTGAGGAAGGCTGCCGCTCCGTGGGCAATCATGCAATCTCGCTCCATTTCTCCGAAA 2358431 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || | |||||||| | || | ||| || ||||||| Sbjct 2358430 CGCAAGCCACCATCTCTGGCACGACCTTCTACAGGCTG 2358393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816713689839