Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 187 3e-41 seq9 107 2e-17 >seq1 Length=5810324 Score = 187 bits (206), Expect = 3e-41 Identities = 334/488 (68%), Gaps = 15/488 (3%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| |||||||| || |||| ||| ||||| |||||||| ||||| ||||| ||||| Sbjct 2736444 TGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAG 2736385 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||||||||| || | ||| | ||| | || || | ||| | | ||| Sbjct 2736384 GTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGCCA 2736325 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| || ||| ||||||||| | ||||| ||||||||||| |||||||| || Sbjct 2736324 ATGCCACCAGCCATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCA 2736265 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| | |||||||| || |||||||| ||||| || | || | || || Sbjct 2736264 ATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTTGAGGGGTACCA 2736205 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 || |||||||||||||| | || ||||| |||| | ||||||| || |||||| Sbjct 2736204 GCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTC 2736145 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 | | |||||| | | || ||| |||| || ||||| |||||| Sbjct 2736144 TCAATAACGCGCTCAA---TATTGTC-----------ACCC-CAGATGCCGACAGCGACG 2736100 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGAC 1630485 ||||| | ||||| ||| || ||||| || | |||| | |||| |||||| || Sbjct 2736099 CGCATAATCATGTGCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGAT 2736040 Query 1630486 CGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGCG 1630545 || || |||| ||| ||||||||| || ||||| ||||||| ||| ||| Sbjct 2736039 CGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCACGGTCGTACACGATCGCG 2735980 Query 1630546 GCGTCGAG 1630553 | ||| || Sbjct 2735979 GAGTCCAG 2735972 Score = 129 bits (142), Expect = 7e-24 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||||| ||||||||||| || |||||| |||| |||||| | |||||||||||||| Sbjct 1724153 CAACTACCTGGACATCAAGCCCCTCCTCGATGTTGGCTGCAAGACCGTGGCCAACATGAT 1724094 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||| |||||||||||||| || ||||| || ||||||| Sbjct 1724093 TAAGGGCAAATCGCCCGAGGAGATTCGAAAGACTTTCAACATCA 1724050 >seq9 Length=1624432 Score = 107 bits (118), Expect = 2e-17 Identities = 137/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| |||||||||||||| | || ||||| Sbjct 713218 GCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCAGGGAGATG 713159 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||||| ||| ||| || |||||||| Sbjct 713158 TTCTCCATGAAGTCGAAAGGGTTGGTGGAGTTGTACACCTTCTCGTTGCCAAGAGCGACG 713099 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || |||||||| ||||| ||||| |||||||| ||||||| |||||||||||||| Sbjct 713098 --AGGAGGCGGTCAGCGACGAACTCAATGTACTGCTGCATGAGGGTGGCGTTCATGCCGA 713041 Query 868869 TGAGCGC 868875 ||| || Sbjct 713040 GGAGGGC 713034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135342959899