Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarocladium_20oryzae_20[genbank_20GCA_5F001972265.1_202016-12-09] 47 sequences; 32,403,370 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-32 seq9 120 5e-21 seq3 114 2e-19 seq10 98.7 2e-14 >seq1 Length=5810324 Score = 158 bits (174), Expect = 2e-32 Identities = 336/500 (67%), Gaps = 15/500 (3%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || ||||| || |||| ||| ||||| |||||||| ||||||||||| ||||| Sbjct 2736444 TGGTCAACGTAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGCACAAGGCCATTGGAG 2736385 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 |||||||||||| || | ||| | ||| | || || | ||| | | ||| Sbjct 2736384 GTGCCGTTGGTGCCGGCAATGTAAGAGCCAGTAGCCCGAATTCGGTGAACATTGAGGCCA 2736325 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| || ||| ||||||||| | ||||| | || ||||| || |||||||| || Sbjct 2736324 ATGCCACCAGCCATCTTGGAGATCATAGCGCAAGTCTTGAGCGTGTCATAGATGCCATCA 2736265 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| | |||||||| | |||||||| ||||| || | | | || || Sbjct 2736264 ATGCTGTCATCTTTCATGTCGACAAGAAAGCAAGACGATAGCTGAGCTTGAGGGGTACCA 2736205 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGTG 2073840 ||||||||||||||||| | || ||| | ||| |||||| | |||||| Sbjct 2736204 GCATTGAAGAGCGTGGGTGAGGCGTGAGTGAAAAACTTGCTCGACATGAGGTTGTAGGTC 2736145 Query 2073841 GCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGACG 2073900 | | |||||| | | | || ||| |||| || ||||| |||||| Sbjct 2736144 TCAATAACGCGCTCAA-----TATT----GTC-----ACCC-CAGATGCCGACAGCGACG 2736100 Query 2073901 CGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGAC 2073960 ||||| ||||||| ||| || ||||| || | | || | |||| |||||| || Sbjct 2736099 CGCATAATCATGTGCTGTGGACGCTCAACAATCTTGCCGTTGAGCTTGAGCAGGTATGAT 2736040 Query 2073961 CGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGCG 2074020 || ||||||| | ||||||||| |||| | || || |||| ||| ||| Sbjct 2736039 CGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCACGGTCGTACACGATCGCG 2735980 Query 2074021 GCGTCGAGGGCCTCCTTGTG 2074040 | ||| || |||||||||| Sbjct 2735979 GAGTCCAGCTCCTCCTTGTG 2735960 Score = 129 bits (142), Expect = 9e-24 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 2035652 CAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTAT 2035711 ||||||||| ||||||||||||||||||||| | || |||||||||||||||||| | || Sbjct 1724153 CAACTACCTGGACATCAAGCCCCTCCTCGATGTTGGCTGCAAGACCGTGGCCAACATGAT 1724094 Query 2035712 CAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||||| ||||||||||| || || ||||| || ||||||| Sbjct 1724093 TAAGGGCAAATCGCCCGAGGAGATTCGAAAGACTTTCAACATCA 1724050 >seq9 Length=1624432 Score = 120 bits (132), Expect = 5e-21 Identities = 179/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || | || ||| |||||| |||||||||||||| | | Sbjct 713226 TGACACCAGCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCCA 713167 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | ||| ||||||| | ||| ||||||| || Sbjct 713166 GGGAGATGTTCTCCATGAAGTCGAAAGGGTTGGTGGAGTTGTACACCTTCTCGTTGCCAA 713107 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||||| || |||||||| |||||||| ||||||||||| |||||||| |||||| Sbjct 713106 GAGCGACG--AGGAGGCGGTCAGCGACGAACTCAATGTACTGCTGCATGAGGGTGGCGTT 713049 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| ||| || ||| || | || ||| ||||| || ||| | ||||| Sbjct 713048 CATGCCGAGGAGGGCACAGGGAAGAGCATCAGTGAGGAACTCCTTTTCGTAAACCACGGC 712989 Query 794129 CTCGATGATGAT 794140 ||| |||| || Sbjct 712988 CTCAGTGATAAT 712977 >seq3 Length=3685789 Score = 114 bits (126), Expect = 2e-19 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 ||| || |||||||| ||||| | ||||||||||||| |||||| || | || || | Sbjct 1468450 CCTCCCCCCCGGCCGACACAAACTCGTCATCCTCGATGAAGCCGACAGCATGACCTCTGG 1468391 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 || ||||| || |||||| |||||||||| ||| ||||||| || || || || | Sbjct 1468390 TGCGCAGCAAGCTCTCCGACGAACCATGGAAATATACTCCAACACAACACGTTTCGCTTT 1468331 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 |||||||| ||| | | |||| || | || ||| || |||||||| | || Sbjct 1468330 TGCCTGCAATCAGTCCAACAAGATCATAGAGCCACTGCAGTCACGCTGCGCCATTCTCCG 1468271 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 | ||| ||||| || ||||| ||| | ||| || | | |||| ||||| || || Sbjct 1468270 TTATGCTAAACTCACTGATGCCCAAGTCGTCAAGCGCCTTCTCCAGATCATCGAGGCTGA 1468211 Query 2019434 AAAGGT 2019439 ||||| Sbjct 1468210 GAAGGT 1468205 >seq10 Length=1587865 Score = 98.7 bits (108), Expect = 2e-14 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| ||||| |||||| |||| || || ||| | | Sbjct 1148723 GTACTTGGTAACGGCCTTGGTACCCTCAGAGACAGCGTGCTTGGCAAGCTCACCGGGAAG 1148664 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||||| || | ||||||||| || || | | ||||||| |||||| || | Sbjct 1148663 AATCAGGCGGACAGAGGTCTGGATTTCCCGAGAGGAGATCGTGGACTTCTTGTT-GTAGG 1148605 Query 1485591 CGCCAGGC-GGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 || || || |||||| ||| | | ||| |||| ||||| Sbjct 1148604 CGGCAAGCTTAGAGGCCTCAGTGGCAACGCGCTCGAAGATGTC 1148562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916241400395633